BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0256200 Os06g0256200|AK062020
(294 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G37720.1 | chr5:14981805-14983978 REVERSE LENGTH=289 150 6e-37
AT1G66260.1 | chr1:24695895-24697883 REVERSE LENGTH=296 143 1e-34
AT5G02530.1 | chr5:564332-565776 REVERSE LENGTH=293 130 1e-30
AT5G59950.5 | chr5:24140235-24141504 FORWARD LENGTH=246 127 5e-30
AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663 51 8e-07
AT5G44200.1 | chr5:17802062-17803875 REVERSE LENGTH=258 48 8e-06
>AT5G37720.1 | chr5:14981805-14983978 REVERSE LENGTH=289
Length = 288
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 69 STRSSSYAIAKSFNKTKDIVWRQDLFEDSMVAAGLSVTESSTKLYISNLHYGVTKEDIQE 128
+ R SS+ I K + + + W+ LFED + AAG S E T+L+++NL GVT EDI+E
Sbjct: 52 NARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRE 111
Query: 129 LFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPMKIEVIGAD 188
LFSE+G ++ A+HYD N RP+G+AEV++ RRS+A ALK+YNNV LDG+PM++E++G +
Sbjct: 112 LFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGN 171
Query: 189 LGMAAPSAPRVSV-VPGARGRGQREVVM 215
AP + RV+V V G GR +R VV+
Sbjct: 172 NSSEAPLSGRVNVNVTGLNGRLKRTVVI 199
>AT1G66260.1 | chr1:24695895-24697883 REVERSE LENGTH=296
Length = 295
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
Query: 72 SSSYAIAKSFNKTKDIVWRQ--DLFEDSMVAAGLSVTESSTKLYISNLHYGVTKEDIQEL 129
SSS++I K + + + W+ DL+E+++ A G+S E T +YI+NL GVT EDI+EL
Sbjct: 67 SSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIREL 126
Query: 130 FSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPMKIEVIGADL 189
++E+G LK A+HYD N RP+GSAEV++ RRS+A+ A+++YNNV LDG+PMK+E++G +
Sbjct: 127 YAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNT 186
Query: 190 GMAAPSAPRVSVVPGARGRGQREVVM 215
+AP A RV+V G GR +R V +
Sbjct: 187 -ESAPVAARVNVT-GLNGRMKRSVFI 210
>AT5G02530.1 | chr5:564332-565776 REVERSE LENGTH=293
Length = 292
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 94/139 (67%), Gaps = 14/139 (10%)
Query: 71 RSSSYAIAKSFNKTKDIVWRQDLF-EDSMVAA-----------GLSVTESSTKLYISNLH 118
R++ Y+ + D +W+ D+F D+ VAA G S E+ TKLYISNL
Sbjct: 57 RTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLD 116
Query: 119 YGVTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGK 178
YGV+ EDI+ELFSE+G LK +HYD + R G+AEV+F+RR +A+AA+KRYNNV+LDGK
Sbjct: 117 YGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGK 176
Query: 179 PMKIEVIGADLGMAAPSAP 197
MKIE++G +L +AP+ P
Sbjct: 177 LMKIEIVGTNL--SAPALP 193
>AT5G59950.5 | chr5:24140235-24141504 FORWARD LENGTH=246
Length = 245
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 90/134 (67%), Gaps = 8/134 (5%)
Query: 69 STRSSSYAIAKSFNKTKDIVWRQDLF----EDSMVAAGLSVTESSTKLYISNLHYGVTKE 124
STRS+ Y AK+ T W D+F ED + E+ TKLYISNL YGV E
Sbjct: 47 STRSAPYQSAKAPEST----WGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNE 102
Query: 125 DIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPMKIEV 184
DI+ELF+E+G LK VH+D + R G+AEV+++RR +A+AA+K+YN+V+LDGKPMKIE+
Sbjct: 103 DIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEI 162
Query: 185 IGADLGMAAPSAPR 198
+G +L AA + R
Sbjct: 163 VGTNLQTAAAPSGR 176
>AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663
Length = 662
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 112 LYISNLHYGVTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYN 171
LY+ NL VT E ++ELF+E G + C V D + GS V F+ SEA L N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 172 NVRLDGKPMKIEV 184
+ GKP+ + +
Sbjct: 390 GKMVGGKPLYVAL 402
>AT5G44200.1 | chr5:17802062-17803875 REVERSE LENGTH=258
Length = 257
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 SSTKLYISNLHYGVTKEDIQELFSEMGHLKHCAVHYD-NNRRPTGSAEVIFTRRSEAVAA 166
+ST +YI N+ + T+E + ELFS G +K + D N + P G V+F R + A
Sbjct: 32 ASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
Query: 167 LKRYNNVRLDGKPMKIEV 184
+K + LD +P++++
Sbjct: 92 VKYISGTILDDRPIRVDF 109
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,820,645
Number of extensions: 123712
Number of successful extensions: 519
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 6
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)