Os11g0100200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os11g0100200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.28 | 0.426 | 7.94 | 0.611 | 0.447 | -1.45 | 0.145 | -1.35 | 0.61 | 19.3 | 26.1 | 84 | -- | -- |
| 85.2 | 0.43 | 7.96 | 0.424 | 0.457 | -1.34 | 0.292 | -- | 0.574 | 18.9 | 26.25 | 86 | -- | -- |
| 82.32 | 0.423 | 7.94 | 0.606 | 0.447 | -1.46 | -- | -1.35 | 0.607 | 19.4 | 26.16 | 81 | -- | -- |
| 85.25 | 0.43 | 7.97 | 0.39 | 0.439 | -1.37 | -- | -- | 0.558 | 19.4 | 26.57 | 79 | -- | -- |
| 89.89 | 0.442 | 7.93 | 0.548 | -- | -1.53 | -- | -1.23 | 0.583 | -- | 27.59 | 193 | -- | -- |
| 109.8 | 0.491 | 7.9 | 0.728 | 0.622 | -- | 0.935 | -- | 0.854 | 17 | -- | -- | -- | -- |
| 111.85 | 0.495 | 7.9 | 0.729 | 0.633 | -- | -- | -- | 0.859 | 17.3 | -- | -- | -- | -- |
| 91.92 | 0.447 | 7.96 | 0.339 | -- | -1.48 | -- | -- | 0.534 | -- | 28.11 | 202 | -- | -- |
| 88.56 | 0.438 | 7.98 | -- | 0.405 | -1.57 | -- | -- | 0.5 | 20.9 | 29.2 | 67 | -- | -- |
| 132.79 | 0.538 | 7.89 | 0.707 | -- | -- | -- | -- | 0.843 | -- | -- | -- | -- | -- |
| 125.86 | 0.525 | 7.92 | -- | 0.621 | -- | -- | -- | 0.778 | 17.3 | -- | -- | -- | -- |
| 94.68 | 0.453 | 7.97 | -- | -- | -1.6 | -- | -- | 0.474 | -- | 27.88 | 206 | -- | -- |
| 145.98 | 0.564 | 7.91 | -- | -- | -- | -- | -- | 0.764 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 3 | 82.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 5 | 82.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 82.82 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 12 | 83.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 13 | 83.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 16 | 83.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 17 | 83.48 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 18 | 83.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 20 | 83.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 22 | 83.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 25 | 83.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 26 | 83.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 27 | 83.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 31 | 83.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 38 | 83.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 39 | 83.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 45 | 83.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 59 | 83.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 115 | 84.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 131 | 84.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 144 | 85.18 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 152 | 85.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 170 | 85.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 203 | 85.75 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 226 | 86.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 232 | 86.05 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 246 | 86.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 281 | 86.47 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 283 | 86.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 286 | 86.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 313 | 86.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 395 | 86.93 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 417 | 87.00 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 425 | 87.02 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 457 | 87.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 636 | 87.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 637 | 87.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 780 | 87.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 894 | 88.02 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 939 | 88.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 962 | 88.17 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 966 | 88.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |