Os07g0237100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os07g0237100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.7 | 0.219 | 9.55 | 0.584 | 0.716 | 0.702 | -0.231 | -0.54 | 0.135 | 16.4 | 24.15 | 1383 | -- | -- |
| 21.96 | 0.218 | 9.55 | 0.549 | 0.709 | 0.658 | -0.259 | -- | 0.146 | 16.5 | 24.19 | 2465 | -- | -- |
| 21.83 | 0.218 | 9.55 | 0.589 | 0.714 | 0.703 | -- | -0.58 | 0.134 | 16.4 | 24.1 | 1353 | -- | -- |
| 22.13 | 0.219 | 9.56 | 0.548 | 0.706 | 0.663 | -- | -- | 0.135 | 16.5 | 24.05 | 2473 | -- | -- |
| 47.58 | 0.321 | 9.53 | 0.721 | -- | 0.733 | -- | -0.74 | 0.155 | -- | 33.32 | 2637 | -- | -- |
| 29.38 | 0.254 | 9.59 | 0.272 | 0.743 | -- | -0.31 | -- | -0.0301 | 16.3 | -- | -- | -- | -- |
| 29.65 | 0.255 | 9.59 | 0.269 | 0.741 | -- | -- | -- | -0.0318 | 16.3 | -- | -- | -- | -- |
| 47.71 | 0.322 | 9.54 | 0.568 | -- | 0.79 | -- | -- | 0.157 | -- | 26.42 | 2637 | -- | -- |
| 28.03 | 0.247 | 9.58 | -- | 0.731 | 0.412 | -- | -- | 0.0111 | 16.6 | 33 | 2216 | -- | -- |
| 59.22 | 0.36 | 9.59 | 0.239 | -- | -- | -- | -- | -0.0514 | -- | -- | -- | -- | -- |
| 31.55 | 0.263 | 9.6 | -- | 0.736 | -- | -- | -- | -0.0617 | 16.3 | -- | -- | -- | -- |
| 53.77 | 0.342 | 9.57 | -- | -- | 0.598 | -- | -- | 0.00908 | -- | 42.7 | 1216 | -- | -- |
| 60.73 | 0.364 | 9.59 | -- | -- | -- | -- | -- | -0.078 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.87 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 5 | 20.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 6 | 20.92 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 14 | 21.00 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 19 | 21.03 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 20 | 21.04 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 50 | 21.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 76 | 21.25 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 79 | 21.26 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 96 | 21.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 103 | 21.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 130 | 21.36 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 132 | 21.36 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 144 | 21.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 155 | 21.39 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 182 | 21.42 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 204 | 21.46 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 218 | 21.47 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 243 | 21.51 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 263 | 21.53 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 268 | 21.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 277 | 21.55 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 282 | 21.55 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 285 | 21.56 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 314 | 21.59 | wind | 5 | 43200 | > th | dose dependent | sin | 11 | NA |
| 320 | 21.60 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 321 | 21.60 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 354 | 21.63 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 355 | 21.64 | wind | 5 | 43200 | > th | dose independent | sin | 11 | NA |
| 376 | 21.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 384 | 21.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 395 | 21.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 409 | 21.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 430 | 21.69 | wind | 5 | 43200 | < th | dose independent | sin | 11 | NA |
| 436 | 21.69 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 438 | 21.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 456 | 21.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 518 | 21.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 520 | 21.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 561 | 21.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 605 | 21.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 613 | 21.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 640 | 21.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 650 | 21.76 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 680 | 21.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 816 | 21.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 833 | 21.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 834 | 21.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 904 | 21.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 972 | 21.81 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |