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Os03g0278300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ALY protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0123) R2 : 0.482
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.608 (0.0319) R2dC : 0.414 R2C : 0.381
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.216 (0.026) R2dN8 : 0.101 R2N8 : 0.0681
σ : 0.233
deviance : 24.76
__
_____
C
peak time of C : 16.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.46 0.196 13 0.456 0.609 0.357 0.258 -1.15 0.345 16.8 19.98 2810 -- --
19.14 0.204 13 0.379 0.597 0.327 0.161 -- 0.3 16.9 29.87 2753 -- --
17.6 0.195 13 0.461 0.604 0.359 -- -1.18 0.344 16.8 19.97 2769 -- --
19.21 0.204 13 0.367 0.611 0.3 -- -- 0.307 16.8 30 2764 -- --
37.4 0.285 13 0.448 -- 0.357 -- -1.02 0.349 -- 19.99 2794 -- --
21.55 0.218 13 0.337 0.613 -- 0.263 -- 0.252 16.6 -- -- -- --
21.73 0.218 13 0.339 0.615 -- -- -- 0.254 16.5 -- -- -- --
38.28 0.288 13 0.326 -- 0.342 -- -- 0.298 -- 20.02 2800 -- --
22.38 0.22 13 -- 0.597 0.274 -- -- 0.284 16.7 30 2824 -- --
41.9 0.302 13 0.315 -- -- -- -- 0.237 -- -- -- -- --
24.76 0.233 13 -- 0.608 -- -- -- 0.216 16.5 -- -- -- --
40.91 0.298 13 -- -- 0.384 -- -- 0.296 -- 20.03 2815 -- --
44.52 0.311 13 -- -- -- -- -- 0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.92 radiation 20.0 4320 < th dose independent rect. 17 15
2 16.94 radiation 20.0 4320 < th dose independent rect. 6 2
3 16.94 radiation 20.0 4320 < th dose independent rect. 24 8
6 16.95 radiation 20.0 4320 < th dose independent rect. 3 5
15 17.02 radiation 1.0 4320 > th dose dependent rect. 7 1
17 17.05 radiation 40.0 4320 < th dose dependent rect. 7 1
18 17.06 radiation 10.0 4320 > th dose dependent rect. 17 15
22 17.10 radiation 30.0 14400 > th dose independent rect. 7 1
65 17.18 radiation 40.0 4320 < th dose dependent rect. 24 8
67 17.18 radiation 40.0 4320 < th dose dependent rect. 17 15
69 17.19 radiation 40.0 4320 < th dose dependent rect. 2 6
92 17.23 wind 7.0 43200 > th dose independent rect. 11 1
93 17.23 wind 7.0 43200 > th dose dependent rect. 11 1
95 17.27 wind 7.0 43200 < th dose independent rect. 11 1
103 17.29 radiation 40.0 43200 < th dose independent rect. 16 7
111 17.32 humidity 80.0 43200 < th dose independent rect. 8 1
122 17.40 wind 1.0 14400 < th dose independent rect. 19 7
124 17.40 wind 1.0 14400 < th dose dependent rect. 19 7
126 17.41 radiation 10.0 43200 > th dose independent rect. 8 1
152 17.44 radiation 20.0 1440 < th dose independent rect. 2 11
185 17.45 wind 1.0 14400 > th dose independent rect. 19 7
186 17.45 radiation 20.0 1440 < th dose independent rect. 6 7
201 17.46 wind 7.0 43200 > th dose dependent rect. 10 3
202 17.46 wind 1.0 14400 < th dose dependent rect. 17 9
207 17.48 radiation 10.0 1440 < th dose independent rect. 16 18
253 17.56 humidity 70.0 43200 > th dose independent rect. 11 1
254 17.56 wind 1.0 14400 < th dose dependent rect. 21 5
274 17.58 radiation 30.0 1440 < th dose independent rect. 11 2
288 17.59 wind 1.0 14400 < th dose dependent rect. 22 3
290 17.60 radiation 20.0 1440 < th dose independent sin 7 NA
293 17.60 wind 1.0 14400 > th dose independent rect. 19 2
294 17.60 radiation 10.0 43200 > th dose independent rect. 7 3
306 17.62 radiation 1.0 43200 > th dose independent rect. 13 1
307 17.62 radiation 1.0 43200 < th dose independent rect. 13 1
312 17.62 radiation 1.0 43200 < th dose dependent rect. 13 1
326 17.65 wind 7.0 43200 > th dose independent rect. 3 11
333 17.66 humidity 80.0 43200 < th dose independent rect. 7 3
343 17.66 wind 7.0 43200 < th dose independent rect. 3 11
350 17.66 humidity 80.0 43200 > th dose dependent rect. 12 1
356 17.67 humidity 80.0 43200 > th dose independent rect. 8 1
375 17.68 radiation 10.0 43200 > th dose independent sin 8 NA
408 17.69 radiation 10.0 1440 < th dose independent sin 12 NA
427 17.70 radiation 10.0 4320 > th dose independent rect. 6 2
433 17.71 precipitation 0.1 43200 > th dose independent rect. 9 1
449 17.71 precipitation 0.1 43200 > th dose dependent rect. 9 1
481 17.73 precipitation 0.1 43200 < th dose independent rect. 9 1
486 17.73 radiation 10.0 43200 < th dose independent rect. 18 5
495 17.73 precipitation 0.1 43200 < th dose dependent rect. 9 1
514 17.74 precipitation 0.1 43200 > th dose dependent rect. 20 2
520 17.75 radiation 20.0 43200 > th dose independent rect. 12 1
522 17.75 precipitation 0.1 43200 < th dose independent rect. 20 2
529 17.75 precipitation 0.1 43200 < th dose dependent rect. 20 2
530 17.76 humidity 70.0 43200 < th dose independent rect. 11 1
537 17.76 radiation 40.0 43200 < th dose independent rect. 16 15
541 17.76 wind 1.0 43200 < th dose dependent rect. 4 3
544 17.77 wind 1.0 43200 > th dose independent rect. 5 1
546 17.77 precipitation 0.1 43200 > th dose independent rect. 20 2
549 17.77 precipitation 0.1 43200 < th dose independent rect. 18 4
550 17.77 radiation 10.0 43200 > th dose independent rect. 5 9
570 17.77 precipitation 0.1 43200 < th dose dependent rect. 18 4
590 17.79 precipitation 0.1 43200 > th dose independent rect. 16 1
593 17.79 precipitation 0.1 43200 > th dose independent rect. 18 4
600 17.79 precipitation 0.1 43200 > th dose independent rect. 6 7
631 17.79 wind 1.0 43200 > th dose dependent rect. 1 2
638 17.80 radiation 40.0 43200 < th dose independent rect. 16 1
644 17.80 precipitation 0.1 43200 < th dose independent rect. 6 7
650 17.80 wind 9.0 43200 > th dose dependent rect. 15 2
659 17.80 precipitation 0.1 43200 > th dose dependent rect. 6 7
660 17.80 precipitation 0.1 43200 < th dose dependent rect. 6 7
669 17.81 precipitation 0.1 43200 < th dose independent rect. 16 1
673 17.81 precipitation 0.1 43200 < th dose independent rect. 16 6
678 17.81 precipitation 0.1 43200 < th dose independent rect. 14 8
701 17.81 precipitation 0.1 43200 < th dose dependent rect. 16 1
704 17.81 precipitation 0.1 43200 < th dose dependent rect. 16 6
705 17.81 precipitation 0.1 43200 < th dose dependent rect. 14 8
714 17.82 precipitation 0.1 43200 > th dose independent rect. 14 8
726 17.82 precipitation 0.1 43200 > th dose dependent rect. 18 4
748 17.83 precipitation 0.1 43200 > th dose independent rect. 16 6
756 17.83 wind 3.0 14400 < th dose dependent rect. 19 1
757 17.83 wind 1.0 14400 < th dose dependent rect. 23 1
759 17.83 radiation 20.0 43200 < th dose dependent rect. 10 3
760 17.83 radiation 20.0 43200 < th dose dependent rect. 8 5
793 17.84 wind 9.0 43200 < th dose dependent rect. 1 2
794 17.84 radiation 20.0 43200 < th dose dependent rect. 8 3
803 17.85 radiation 1.0 43200 < th dose independent rect. 4 1
806 17.85 precipitation 0.1 43200 < th dose independent rect. 7 4
829 17.85 precipitation 0.1 43200 < th dose dependent rect. 7 4
840 17.86 radiation 30.0 43200 < th dose independent rect. 4 3
846 17.86 precipitation 0.1 43200 > th dose independent rect. 14 5
886 17.87 radiation 20.0 43200 > th dose independent rect. 9 4
890 17.87 precipitation 0.1 43200 < th dose independent rect. 14 5
903 17.87 precipitation 0.1 43200 < th dose dependent rect. 14 5
928 17.88 precipitation 0.1 43200 > th dose dependent rect. 16 1
952 17.89 radiation 1.0 43200 < th dose dependent rect. 20 9
980 17.91 radiation 20.0 43200 > th dose independent rect. 10 1