BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0278300 Os03g0278300|AK064165
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0278300 Similar to ALY protein 323 6e-89
Os12g0100100 Similar to ALY protein 139 2e-33
Os11g0100200 RNA-binding region RNP-1 (RNA recognition moti... 135 2e-32
Os08g0427900 Similar to Hin19 (Fragment) 134 5e-32
Os06g0256200 Similar to Keratinocytes proline-rich protein 119 2e-27
Os07g0237100 RNA-binding region RNP-1 (RNA recognition moti... 108 3e-24
>Os03g0278300 Similar to ALY protein
Length = 238
Score = 323 bits (828), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 171/238 (71%), Positives = 171/238 (71%)
Query: 1 RRSRLHPPNPESAASSFVVELARSPNPSAGPYQPPKAPESAWQHDMYSDVAAXXXXXXXX 60
RRSRLHPPNPESAASSFVVELARSPNPSAGPYQPPKAPESAWQHDMYSDVAA
Sbjct: 1 RRSRLHPPNPESAASSFVVELARSPNPSAGPYQPPKAPESAWQHDMYSDVAAGGGGGSGG 60
Query: 61 XXRVSAIETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFAR 120
RVSAIETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFAR
Sbjct: 61 GGRVSAIETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFAR 120
Query: 121 RGDAVAAVKKYNNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXXYVRNVAKSAXXXXXXXX 180
RGDAVAAVKKYNNVQLDGKPMKIEI YVRNVAKSA
Sbjct: 121 RGDAVAAVKKYNNVQLDGKPMKIEILGTNTPTAAAALPANNGGYVRNVAKSAPRGGPAGL 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERSQPKSAEELDADLEKYHADAMQTN 238
KERSQPKSAEELDADLEKYHADAMQTN
Sbjct: 181 PQGRPRPRGGGRRRGGGGGSGGPGGSGGRRGKERSQPKSAEELDADLEKYHADAMQTN 238
>Os12g0100100 Similar to ALY protein
Length = 228
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 75/79 (94%)
Query: 67 IETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRGDAVA 126
+ETGTKLYISNLD+ VS EDIKELFSE+GD+K+Y I+YDRSGRSKGTAEVVF+R+ DA+A
Sbjct: 68 VETGTKLYISNLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFSRKSDALA 127
Query: 127 AVKKYNNVQLDGKPMKIEI 145
AVK+YNNVQLDGKPMK+E+
Sbjct: 128 AVKRYNNVQLDGKPMKLEL 146
>Os11g0100200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 224
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 76/81 (93%)
Query: 65 SAIETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRGDA 124
+ +ETGTKL+ISNLD+ VS EDIKELFSE+GD+K+Y I+YD+SGRSKGTAEVVF+R+ DA
Sbjct: 62 TPVETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDA 121
Query: 125 VAAVKKYNNVQLDGKPMKIEI 145
+AAVK+YNNVQLDGKPMK+E+
Sbjct: 122 LAAVKRYNNVQLDGKPMKLEL 142
>Os08g0427900 Similar to Hin19 (Fragment)
Length = 286
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 11/110 (10%)
Query: 36 KAPESAWQHDMYSDVAAXXXXXXXXXXRVSAIETGTKLYISNLDFGVSTEDIKELFSELG 95
+ + W+ D++SD A S IETGTKLYISNLD+GVS EDIKELFSE+G
Sbjct: 66 RTKDMTWRPDLFSDSMA-----------ASGIETGTKLYISNLDYGVSNEDIKELFSEVG 114
Query: 96 DLKKYVIHYDRSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPMKIEI 145
LK++ +H+D GR GTAEVVF RR DA+AA+K+YNNV LDGK MKIE+
Sbjct: 115 HLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEV 164
>Os06g0256200 Similar to Keratinocytes proline-rich protein
Length = 294
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 12/112 (10%)
Query: 36 KAPESAWQHDMYSD--VAAXXXXXXXXXXRVSAIETGTKLYISNLDFGVSTEDIKELFSE 93
K + W+ D++ D VAA +S E+ TKLYISNL +GV+ EDI+ELFSE
Sbjct: 83 KTKDIVWRQDLFEDSMVAAG----------LSVTESSTKLYISNLHYGVTKEDIQELFSE 132
Query: 94 LGDLKKYVIHYDRSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPMKIEI 145
+G LK +HYD + R G+AEV+F RR +AVAA+K+YNNV+LDGKPMKIE+
Sbjct: 133 MGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPMKIEV 184
>Os07g0237100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 204
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 71/83 (85%), Gaps = 3/83 (3%)
Query: 66 AIETGTKLYISNLDFGVSTEDIK---ELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRG 122
++ETGTKL+ISNLD GV+ +D++ ELFSE+G+LK+Y ++YD+ G+S+GTAEVVFAR+
Sbjct: 88 SLETGTKLHISNLDPGVTVDDVQVLFELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKV 147
Query: 123 DAVAAVKKYNNVQLDGKPMKIEI 145
DA+ A+K+Y+ V LDG PMKI++
Sbjct: 148 DALEAIKRYDGVILDGNPMKIDL 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,937,200
Number of extensions: 206122
Number of successful extensions: 1090
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 6
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)