Os08g0427900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hin19 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0427900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Hin19 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.35 | 0.151 | 12 | -0.082 | 0.447 | 0.324 | 0.209 | 0.999 | -0.157 | 22.4 | 29.5 | 4670 | -- | -- |
| 10.55 | 0.151 | 12 | 0.135 | 0.446 | 0.425 | 0.232 | -- | -0.122 | 22.3 | 29.4 | 4674 | -- | -- |
| 10.53 | 0.151 | 12 | -0.0824 | 0.447 | 0.325 | -- | 0.975 | -0.157 | 22.4 | 29.48 | 4669 | -- | -- |
| 10.7 | 0.152 | 12 | 0.134 | 0.447 | 0.437 | -- | -- | -0.123 | 22.3 | 29.43 | 4629 | -- | -- |
| 22.01 | 0.218 | 12 | -0.116 | -- | 0.259 | -- | 0.963 | -0.154 | -- | 29.65 | 5882 | -- | -- |
| 17.8 | 0.198 | 11.9 | 0.0154 | 0.418 | -- | 0.161 | -- | -0.107 | 22.4 | -- | -- | -- | -- |
| 17.9 | 0.198 | 11.9 | 0.00912 | 0.418 | -- | -- | -- | -0.107 | 22.3 | -- | -- | -- | -- |
| 22.09 | 0.219 | 11.9 | 0.131 | -- | 0.363 | -- | -- | -0.131 | -- | 29.89 | 5867 | -- | -- |
| 11.15 | 0.155 | 12 | -- | 0.446 | 0.411 | -- | -- | -0.135 | 22.4 | 29.47 | 4629 | -- | -- |
| 28.55 | 0.25 | 11.9 | 0.0157 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 17.9 | 0.198 | 11.9 | -- | 0.418 | -- | -- | -- | -0.108 | 22.3 | -- | -- | -- | -- |
| 22.52 | 0.221 | 11.9 | -- | -- | 0.337 | -- | -- | -0.142 | -- | 29.85 | 5861 | -- | -- |
| 28.55 | 0.249 | 11.9 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 2 | 10.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 3 | 10.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 5 | 10.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 10 | 10.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 25 | 10.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 38 | 10.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 39 | 10.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 42 | 10.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 43 | 10.34 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 96 | 10.39 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 113 | 10.42 | temperature | 30 | 4320 | < th | dose independent | sin | 6 | NA |
| 219 | 10.48 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 333 | 10.53 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 417 | 10.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 538 | 10.62 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 581 | 10.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 18 |
| 594 | 10.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 20 |
| 618 | 10.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 690 | 10.64 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 743 | 10.66 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 922 | 10.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 972 | 10.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 976 | 10.69 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 977 | 10.69 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 986 | 10.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 21 |
| 987 | 10.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |