BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0427900 Os08g0427900|AK103217
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G37720.1 | chr5:14981805-14983978 REVERSE LENGTH=289 164 4e-41
AT1G66260.1 | chr1:24695895-24697883 REVERSE LENGTH=296 154 6e-38
AT5G02530.1 | chr5:564332-565776 REVERSE LENGTH=293 151 5e-37
AT5G59950.5 | chr5:24140235-24141504 FORWARD LENGTH=246 150 6e-37
AT3G10400.1 | chr3:3232636-3233421 FORWARD LENGTH=262 51 9e-07
AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663 48 6e-06
AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683 48 7e-06
>AT5G37720.1 | chr5:14981805-14983978 REVERSE LENGTH=289
Length = 288
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 6/151 (3%)
Query: 49 LGVNSRPSARTIAKSFSRTKDMTWRPDLFSDSM---AASGIETGTKLYISNLDYGVSNED 105
L VN+RPS+ TI K R + + W+ LF D + ASG+E GT+L+++NLD GV+NED
Sbjct: 49 LAVNARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNED 108
Query: 106 IKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVI 165
I+ELFSE+G ++R+A+H+D GRP+GTAEVV+ RRSDA ALK+YNNVLLDG+ M++E++
Sbjct: 109 IRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEIL 168
Query: 166 GSDLG--LPMTPRINV-VGASNGRPTRTVVM 193
G + P++ R+NV V NGR RTVV+
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTVVI 199
>AT1G66260.1 | chr1:24695895-24697883 REVERSE LENGTH=296
Length = 295
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 112/152 (73%), Gaps = 8/152 (5%)
Query: 49 LGVNSRPSAR-TIAKSFSRTKDMTWRP--DLFSDSMAA---SGIETGTKLYISNLDYGVS 102
L VN+RPS+ +I K R + + W+ DL+ +++ A SG+E GT +YI+NLD GV+
Sbjct: 60 LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVT 119
Query: 103 NEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKI 162
NEDI+EL++E+G LKR+A+H+D GRP+G+AEVV+ RRSDAI A+++YNNVLLDG+ MK+
Sbjct: 120 NEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKL 179
Query: 163 EVIGSDL-GLPMTPRINVVGASNGRPTRTVVM 193
E++G + P+ R+NV G NGR R+V +
Sbjct: 180 EILGGNTESAPVAARVNVTGL-NGRMKRSVFI 210
>AT5G02530.1 | chr5:564332-565776 REVERSE LENGTH=293
Length = 292
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 98/142 (69%), Gaps = 17/142 (11%)
Query: 49 LGVNSRPSARTIAKSFSRTKDMTWRPDLFSD--SMAA-------------SGIETGTKLY 93
+G + P +R I + + D W+ D+F+ S+AA S IETGTKLY
Sbjct: 54 VGARTAPYSRPIQQQ--QAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLY 111
Query: 94 ISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNV 153
ISNLDYGVSNEDIKELFSEVG LKR+ +H+D GR GTAEVVF+RR DA+AA+KRYNNV
Sbjct: 112 ISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNV 171
Query: 154 LLDGKAMKIEVIGSDLGLPMTP 175
LDGK MKIE++G++L P P
Sbjct: 172 QLDGKLMKIEIVGTNLSAPALP 193
>AT5G59950.5 | chr5:24140235-24141504 FORWARD LENGTH=246
Length = 245
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 53 SRPSARTIAKSFSRTKDMTWRPDLFSD-------SMAASGIETGTKLYISNLDYGVSNED 105
+R S R+ ++ + TW D+FSD +++GIETGTKLYISNLDYGV NED
Sbjct: 44 NRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNED 103
Query: 106 IKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVI 165
IKELF+EVG LKR+ VHFD GR GTAEVV++RR DA+AA+K+YN+V LDGK MKIE++
Sbjct: 104 IKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIV 163
Query: 166 GSDLGLPMTPRINVV-GASNGRP 187
G++L P G SNG P
Sbjct: 164 GTNLQTAAAPSGRPANGNSNGAP 186
>AT3G10400.1 | chr3:3232636-3233421 FORWARD LENGTH=262
Length = 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 92 LYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPN-GTAEVVFTRRSDAIAALKRY 150
LY+SNLD+ ++N DI LFS G + R V D + R + G A V++ R DA A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 151 NNVLLDGKAMKIEV 164
+ +L+G+ + + +
Sbjct: 119 DAKILNGRKLTVSI 132
>AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663
Length = 662
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 89 GTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALK 148
G LY+ NLD V++E ++ELF+E G + V D G G+ V F+ S+A L
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 149 RYNNVLLDGKAMKIEV 164
N ++ GK + + +
Sbjct: 387 EMNGKMVGGKPLYVAL 402
>AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683
Length = 682
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 89 GTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALK 148
G+ LY+ NLD V++E +KE+FSE G++ V + G G V ++ +A+ A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400
Query: 149 RYNNVLLDGKAMKIEV 164
N ++ K + + +
Sbjct: 401 EMNGKMIGRKPLYVAL 416
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,231,301
Number of extensions: 151247
Number of successful extensions: 525
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 7
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)