BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0522400 Os10g0522400|AK071847
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0522400 Cyclin-like F-box domain containing protein 237 4e-63
Os03g0116700 Cyclin-like F-box domain containing protein 196 1e-50
Os04g0571300 Cyclin-like F-box domain containing protein 158 2e-39
Os02g0675800 Cyclin-like F-box domain containing protein 156 6e-39
Os09g0525300 Cyclin-like F-box domain containing protein 130 4e-31
Os12g0131600 Cyclin-like F-box domain containing protein 69 1e-12
Os08g0150700 Cyclin-like F-box domain containing protein 69 2e-12
>Os10g0522400 Cyclin-like F-box domain containing protein
Length = 165
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/149 (80%), Positives = 120/149 (80%)
Query: 17 ETSXXXXXXXXXXXXDLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPE 76
ETS DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPE
Sbjct: 17 ETSAAVGGAAAAGLGDLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPE 76
Query: 77 NYRYLMSFVEXXXXXXXXXXXXXXXXXPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRV 136
NYRYLMSFVE PAGKKEIYARLARPVPFDGGSKEFWLEKSKGRV
Sbjct: 77 NYRYLMSFVEGGGGGDDGRQLRRRRWRPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRV 136
Query: 137 CMALSSKSLVITGIDDRRYWQHIPTAESR 165
CMALSSKSLVITGIDDRRYWQHIPTAESR
Sbjct: 137 CMALSSKSLVITGIDDRRYWQHIPTAESR 165
>Os03g0116700 Cyclin-like F-box domain containing protein
Length = 297
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/134 (72%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXX 91
+LPELCAAEVLL LDAPEICRLARLN AFRGAA ADFVWEAKLPENY YL+ FV+
Sbjct: 26 ELPELCAAEVLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMEG 85
Query: 92 XXXXXXXXXXXXPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGID 151
GKKE+YARLA+ VPFDGG KE WLEKSKG VC+ALSSKSLVITGID
Sbjct: 86 GGGGRERSVM----GKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGID 141
Query: 152 DRRYWQHIPTAESR 165
DRRYW H+PT ESR
Sbjct: 142 DRRYWSHMPTTESR 155
>Os04g0571300 Cyclin-like F-box domain containing protein
Length = 304
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 93/139 (66%), Gaps = 5/139 (3%)
Query: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXX 91
D+PE C A VLL LD PEIC++ARLN AFRGAA AD VW AKLP NYRYL +
Sbjct: 25 DMPESCVAAVLLYLDPPEICKVARLNRAFRGAASADCVWAAKLPANYRYLAALAAAADDD 84
Query: 92 XXXXXXXXXXXXPAG-----KKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLV 146
KKEIYARL RP PFDGG+KEFW+EK+KG +C+++SSK++
Sbjct: 85 SGGDGATEGNGSRCSSAAMIKKEIYARLCRPTPFDGGTKEFWMEKNKGGLCISISSKAMA 144
Query: 147 ITGIDDRRYWQHIPTAESR 165
ITGIDDRRYW H+ T ESR
Sbjct: 145 ITGIDDRRYWSHLSTEESR 163
>Os02g0675800 Cyclin-like F-box domain containing protein
Length = 297
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXX 91
D+PE C A VLL LD PEIC++ARLN AFRGAA AD VW KLP NYRYL++F
Sbjct: 21 DMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLAFAAAADDE 80
Query: 92 XXXXXXXXXX-XXPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGI 150
P+ KK+I+ARL RP PFD G+KEFW++K+KG +C+++SSK++VITGI
Sbjct: 81 GGDGGHGNGKRSSPSSKKDIFARLCRPTPFDFGNKEFWIDKNKGGICLSISSKAMVITGI 140
Query: 151 DDRRYWQHIPTAESR 165
DDRRYW + T ESR
Sbjct: 141 DDRRYWSQLATEESR 155
>Os09g0525300 Cyclin-like F-box domain containing protein
Length = 281
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 81/134 (60%), Gaps = 15/134 (11%)
Query: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXX 91
DLPE C AEVL RLD PEICR+ARL+ F G VWEAKLP NY L++
Sbjct: 21 DLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYARLLAVAADGEAA 74
Query: 92 XXXXXXXXXXXXPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGID 151
KKE+YARL R DGG+KEFWL+K G VCM +SS++L ITGID
Sbjct: 75 ALEAIP---------KKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGID 125
Query: 152 DRRYWQHIPTAESR 165
DRRYW IP ESR
Sbjct: 126 DRRYWNFIPNDESR 139
>Os12g0131600 Cyclin-like F-box domain containing protein
Length = 185
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 33 LPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXXX 92
LPE C A + + CR + ++ F+ AA ++ VWE LP +Y +++ +
Sbjct: 33 LPEACLAHAISFTTPTDACRCSAVSADFQAAASSNAVWERFLPPDYHSILARADDPVDF- 91
Query: 93 XXXXXXXXXXXPAGKKEIYARLARP-VPFDGGSKEFWLEKSKGRVCMALSSKSLVITGID 151
KE++ LA+ V D SK FWLE++ G C LSS+SL I D
Sbjct: 92 -----------TTSNKELFLSLAQDHVLLDQRSKSFWLERTSGAKCYLLSSRSLEIAWGD 140
Query: 152 DRRYWQHIPTAESR 165
D RYW+ I +SR
Sbjct: 141 DARYWRWIYLPDSR 154
>Os08g0150700 Cyclin-like F-box domain containing protein
Length = 299
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEXXXXX 91
DLPE C A+V+ + CRLA ++ +FR AA +D VW+ LP +YR +
Sbjct: 22 DLPEACLADVIALTSPRDACRLAAVSPSFRAAAESDAVWDRFLPPDYRAIAPLPPPPATA 81
Query: 92 XXXXXXXXXXXXPAGKKEIYARLA-RPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGI 150
KK +Y L +PVP D GS WLEK G C AL ++ L +
Sbjct: 82 AASGGKRM-------KKGVYLGLCDKPVPVDDGSMMVWLEKESGAKCFALPARKLSLPWE 134
Query: 151 DDRRYWQHIPTAESR 165
D W+ P SR
Sbjct: 135 DGEFSWRWTPHPLSR 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,323,223
Number of extensions: 139425
Number of successful extensions: 282
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 8
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)