BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0508100 Os10g0508100|Os10g0508100
(470 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0508100 Protein of unknown function DUF641, plant doma... 658 0.0
Os10g0378400 Protein of unknown function DUF641, plant doma... 184 1e-46
Os05g0206600 Protein of unknown function DUF641, plant doma... 120 3e-27
Os01g0203800 Protein of unknown function DUF641, plant doma... 118 1e-26
Os01g0823700 Protein of unknown function DUF641, plant doma... 99 6e-21
Os03g0825600 Conserved hypothetical protein 97 2e-20
>Os10g0508100 Protein of unknown function DUF641, plant domain containing protein
Length = 470
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/470 (73%), Positives = 346/470 (73%)
Query: 1 MLQKFALAFKTKTIEFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVVVLKPDTVQ 60
MLQKFALAFKTKTIEFF QRVVVLKPDTVQ
Sbjct: 1 MLQKFALAFKTKTIEFFAEEEEDEDADGGVSAAAAAAVGVGEGGVLAGQRVVVLKPDTVQ 60
Query: 61 SPNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHL 120
SPNPS VSHL
Sbjct: 61 SPNPSGGVGVGVVVGEAAAVEAALATASSFQAAYLHLQAAHAPFLPDAAAAADAAAVSHL 120
Query: 121 RRLSEVKRLARDPGVGGGALTAHLEAQVRENQALLRSFDAVVNRLQXXXXXXXXXXXSLR 180
RRLSEVKRLARDPGVGGGALTAHLEAQVRENQALLRSFDAVVNRLQ SLR
Sbjct: 121 RRLSEVKRLARDPGVGGGALTAHLEAQVRENQALLRSFDAVVNRLQAALDGKDAAAASLR 180
Query: 181 RDHAELADGNXXXXXXXXXXXXXXXXXXXXXXXXXMLSAGVFDSVLRDALRVAHRFTRSL 240
RDHAELADGN MLSAGVFDSVLRDALRVAHRFTRSL
Sbjct: 181 RDHAELADGNARLGARLDRALAPPPGAGGDDALGAMLSAGVFDSVLRDALRVAHRFTRSL 240
Query: 241 ADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGSTDATTL 300
ADLLRCAGWDL VYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGSTDATTL
Sbjct: 241 ADLLRCAGWDLAAAAAAVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGSTDATTL 300
Query: 301 EGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEFAQFCDRKYKQLIHPGIESSLFGNS 360
EGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEFAQFCDRKYKQLIHPGIESSLFGNS
Sbjct: 301 EGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEFAQFCDRKYKQLIHPGIESSLFGNS 360
Query: 361 DCGKLPVLGVAGPLYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSVVYMENIVR 420
DCGKLPVLGVAGPLYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSVVYMENIVR
Sbjct: 361 DCGKLPVLGVAGPLYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSVVYMENIVR 420
Query: 421 SKGFSGSKELGKMMRPKVGFTVVPGFRLGGTVIQCRVYLDCGKREGIIGE 470
SKGFSGSKELGKMMRPKVGFTVVPGFRLGGTVIQCRVYLDCGKREGIIGE
Sbjct: 421 SKGFSGSKELGKMMRPKVGFTVVPGFRLGGTVIQCRVYLDCGKREGIIGE 470
>Os10g0378400 Protein of unknown function DUF641, plant domain containing protein
Length = 338
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 140/245 (57%), Gaps = 14/245 (5%)
Query: 217 LSAGVFDSVLRDALRVAHRFTRSLADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLS 276
L+ +F S + +A + H F++ L ++++ AGWDL + P V Y+R H +YA S
Sbjct: 99 LTPSLFTSAVDNAYQSIHDFSKPLINMMKAAGWDLDAAANAIEPAVVYTRRAHKKYAFES 158
Query: 277 RVCLSMFDGFDSYQFGGSTDATTLEGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEF 336
+C MF GF F +++ ++ + QF+ DP+++++ +PD F
Sbjct: 159 YICQRMFGGFQEESF-------SVKAANITVSNEAFFHQFLAVRAMDPLDVLSQNPDSVF 211
Query: 337 AQFCDRKYKQLIHPGIESSLFGNSDCGKLPVLG--VAGPLYELFVAMASSIWTLHRLAWA 394
+FC KY L+HP +E S FGN D + G P Y+ F+ +A SIW LHRLA++
Sbjct: 212 GKFCRSKYLLLVHPKMEGSFFGNMDQRNYVMSGGHPRTPFYQAFLKLAKSIWLLHRLAYS 271
Query: 395 YDPAVGIFQIGQGAEYSVVYMENIVRSKGFSGSKELGKMMRPKVGFTVVPGFRLGGTVIQ 454
+DP V +FQ+ +G+++S ++ME++V++ E RPKVG V+PGF +G +VIQ
Sbjct: 272 FDPKVKVFQVKKGSDFSEIHMESVVKNIILDEGAE-----RPKVGLMVMPGFLIGTSVIQ 326
Query: 455 CRVYL 459
RVYL
Sbjct: 327 SRVYL 331
>Os05g0206600 Protein of unknown function DUF641, plant domain containing protein
Length = 485
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 125/269 (46%), Gaps = 31/269 (11%)
Query: 217 LSAGVFDSVLRDALRVAHRFTRSLADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLS 276
L+A F + LR A R F +S+ +R AGWD +PGV PG ++AL S
Sbjct: 227 LNATHFLTALRHAARSVRSFAKSMLGEMRRAGWDPVAAAAAAHPGVPLRHPGDAKFALES 286
Query: 277 RVCLSMFDGFDSYQFGGST--DATTLEGIDLAIRRNESLQQFIEHSDADPMELIN--SSP 332
V L MFDGF FG S D ++ + R +F E A E ++ SS
Sbjct: 287 FVALKMFDGFHRRDFGLSALHDRSSYD-------RRRLFDEFAELKAAPAAEFLDARSSR 339
Query: 333 DCEFAQFCDRKYKQLIHPGIESSLFGNS--------DCGKLPVLGVAGPLYELFVAMASS 384
+F +Y ++H +E++ FG++ LP P + F MA
Sbjct: 340 WGALGEFLRDRYLSVVHERMEAAFFGSTAQRGAAASAGAALP----GTPWFAEFAEMARR 395
Query: 385 IWTLHRLAWAYDP--AVGIFQIGQGAEYSVVYMENIVRSKGFSGSKELGKMMRPK----- 437
+W LH L A+D A IFQ+ GA +S VYME++ G G +
Sbjct: 396 VWLLHCLFLAFDDGGASTIFQVAAGARFSEVYMESVGDGDGDGDDGGAGTAVAAAAAGDR 455
Query: 438 -VGFTVVPGFRLGGTVIQCRVYLDCGKRE 465
VGFTVVPGF++G TV+QCRVYL R+
Sbjct: 456 VVGFTVVPGFKVGRTVMQCRVYLSRPARQ 484
>Os01g0203800 Protein of unknown function DUF641, plant domain containing protein
Length = 520
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 154/369 (41%), Gaps = 47/369 (12%)
Query: 117 VSHLRRLSEVKR-LARDPGV--------GGGALTAHLEAQVRENQALLRSFDAVVNRLQX 167
V+ L RLS+ KR RDP G AL AH E E + LL+++ +L+
Sbjct: 166 VAELTRLSDTKRRYLRDPAAAAKNAAAAGHTALYAHAE----EQRHLLKTYQITARKLEG 221
Query: 168 XXXXXXXXXXSLRRDHAELADGNXXXXXXXXXXXXXXXXXXXXXXXXXM-------LSAG 220
LR AE + L+
Sbjct: 222 ----------ELRAKEAEADRARSSLTAELRAERAMEARLHPGRTLASLDELHLSGLNPT 271
Query: 221 VFDSVLRDALRVAHRFTRSLADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLSRVCL 280
F + LR ++ F++S+ + ++ AGWDL V+PGV R G ++ S V +
Sbjct: 272 HFLTALRHTVKSIRSFSKSMLNSMQSAGWDLAAAAAAVHPGVQLRRAGDTKFVFESYVAM 331
Query: 281 SMFDGFDSYQFGGSTDATTLEGIDLAIRRNESLQQFIEHSDADPMELINSSPD--CEFAQ 338
MF F F + + L+ + RR ++F E A +++ F +
Sbjct: 332 KMFANFHRRDF----NLSFLDEREFYDRRR-FFEEFTELKAAPASAFLDARNARWGGFGK 386
Query: 339 FCDRKYKQLIHPGIESSLFGNSDCGKLPVLGVAGP---LYELFVAMASSIWTLHRLAWAY 395
F KY L+H +E++ FG + + G P + F MA +W LH L +A+
Sbjct: 387 FLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLHCLFYAF 446
Query: 396 D-----PAVGIFQIGQGAEYSVVYMENIVRSKGFSGSKELGKMMRPKVGFTVVPGFRLGG 450
D IFQ+ GA +S VYME++ S G S VGFTVVPGFR+G
Sbjct: 447 DGGAEEDGASIFQVRTGARFSEVYMESV--SDGRSDEAAAAAAEERVVGFTVVPGFRVGR 504
Query: 451 TVIQCRVYL 459
T+IQCRVYL
Sbjct: 505 TMIQCRVYL 513
>Os01g0823700 Protein of unknown function DUF641, plant domain containing protein
Length = 437
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 28/245 (11%)
Query: 217 LSAGVFDSVLRDALRVAHRFTRSLADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLS 276
+S +F + + + H F + + ++ + W+L + V Y + H YA+ +
Sbjct: 211 VSTDMFMELFELSTKSIHDFAKLVVRWMKLSRWNLGNLTSPIDNSVVYDKRSHKNYAVEA 270
Query: 277 RVCLSMFDGFDSYQFGGSTDATTLEGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEF 336
M G + +L+ D + S +DP + + +PD F
Sbjct: 271 YFACMML-------MGHKEEYLSLDVFDYVM------------SFSDPFDALMKAPDSCF 311
Query: 337 AQFCDRKYKQLIHPGIESSLFGNSDCGKLPVLG--VAGPLYELFVAMASSIWTLHRLAWA 394
+FC KY ++ P +E S FGN D G P Y+ FV M+ +W +A +
Sbjct: 312 GRFCREKYLAILPPSMEDSFFGNLDHRSFVENGGHPRTPFYQAFVTMSRYVWASLTVARS 371
Query: 395 YDPAVGIFQIGQGAEYSVVYMENIVRSKGFSGSKELGKMMRPKVGFTVVPGFRLGGTVIQ 454
+P +F + G E+ +ME + G K VGFTV+PGF++G TVI+
Sbjct: 372 LNPRAEMFYVKGGTEFRSKHMECVPSKITKEGDK-------VSVGFTVMPGFKIGCTVIR 424
Query: 455 CRVYL 459
CRVYL
Sbjct: 425 CRVYL 429
>Os03g0825600 Conserved hypothetical protein
Length = 317
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 15/228 (6%)
Query: 236 FTRSLADLLRCAGWDLXXXXXXVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGST 295
F L L+R AG DL + + S P ++AL + V + GF+ F
Sbjct: 94 FAGHLLQLMRAAGLDLAAATRSLT-KIPVSSPQLAKHALEAHVTRVLLVGFEHESF--YL 150
Query: 296 DATTLEGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEFAQFCDRKYKQLIHPGIESS 355
D + +D A R E QF + +P EL+ P C F ++ K+ L+ P +E +
Sbjct: 151 DGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALLPPRVEQA 210
Query: 356 LFGNSDCGKLPVLGVA---GPLYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSV 412
+ G+ + + V G A P Y F+ A ++W LH LA+A + F+ G+GAE+
Sbjct: 211 VLGDGEHRRA-VEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGRGAEFHP 269
Query: 413 VYMENIVRSKGFSGSKELGKMMRPKVGFTVVPGFRLG-GTVIQCRVYL 459
YME++ +G + VGF V PGFRLG G V++ RVYL
Sbjct: 270 DYMESVAGGRGGGAAGM-------VVGFAVAPGFRLGNGAVVRARVYL 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,659,692
Number of extensions: 402497
Number of successful extensions: 683
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 7
Length of query: 470
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 366
Effective length of database: 11,605,545
Effective search space: 4247629470
Effective search space used: 4247629470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)