BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0390800 Os10g0390800|AK110269
(299 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0390800 Similar to Ethylene-responsive transcription f... 193 1e-49
Os01g0313300 Similar to EREBP-3 protein (Fragment) 70 3e-12
AK100167 67 1e-11
Os06g0194000 Similar to Ethylene-responsive transcription f... 67 1e-11
Os02g0782700 Similar to Transcription factor EREBP1 67 2e-11
Os07g0617000 Similar to Ethylene response factor 2 66 4e-11
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 65 8e-11
Os04g0429050 64 9e-11
>Os10g0390800 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3) (EREBP-3)
(AtERF3)
Length = 299
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 205 VGEPGHGGAKSMPTTSHTSQPAPPATVASENVDDPEVFDPYDVHGGLASYFAGGAYESLE 264
VGEPGHGGAKSMPTTSHTSQPAPPATVASENVDDPEVFDPYDVHGGLASYFAGGAYESLE
Sbjct: 205 VGEPGHGGAKSMPTTSHTSQPAPPATVASENVDDPEVFDPYDVHGGLASYFAGGAYESLE 264
Query: 265 SLFAHGGDSAAVDQAASDHWPAALWSFADDGSFCF 299
SLFAHGGDSAAVDQAASDHWPAALWSFADDGSFCF
Sbjct: 265 SLFAHGGDSAAVDQAASDHWPAALWSFADDGSFCF 299
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 68/127 (53%)
Query: 1 MCGGAILADLIPSPRSGGHTKKNKRRRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MCGGAILADLIPSPRSGGHTKKNKRRRI
Sbjct: 1 MCGGAILADLIPSPRSGGHTKKNKRRRISDDEDFEAAFEEFDAGDDDSDSDSESEEVDEY 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXHERHGARRFRGVRKRPWGKWAAEIRDPVRGVRV 120
HERHGARRFRGVRKRPWGKWAAEIRDPVRGVRV
Sbjct: 61 DVVVDDDDSEDGVVVLPPPPPPPPVIPHERHGARRFRGVRKRPWGKWAAEIRDPVRGVRV 120
Query: 121 WLGTFPT 127
WLGTFPT
Sbjct: 121 WLGTFPT 127
>Os01g0313300 Similar to EREBP-3 protein (Fragment)
Length = 207
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 89 ERHGARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTFPT 127
+R ++RG+R+RPWGKWAAEIRDPV+GVRVWLGT+PT
Sbjct: 43 KRERKNQYRGIRQRPWGKWAAEIRDPVKGVRVWLGTYPT 81
>AK100167
Length = 571
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 89 ERHGARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTF 125
+R +FRG+R+RPWGKWAAEIRDP +GVRVWLGTF
Sbjct: 108 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTF 144
>Os06g0194000 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3 homolog)
(EREBP-5) (NtERF5)
Length = 362
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 89 ERHGARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTF 125
+R +FRG+R+RPWGKWAAEIRDP +GVRVWLGTF
Sbjct: 108 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTF 144
>Os02g0782700 Similar to Transcription factor EREBP1
Length = 365
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 89 ERHGARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTF 125
+R +FRG+R+RPWGKWAAEIRDP +GVRVWLGTF
Sbjct: 113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTF 149
>Os07g0617000 Similar to Ethylene response factor 2
Length = 342
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 32/38 (84%)
Query: 90 RHGARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTFPT 127
R R+RG+R+RPWGKWAAEIRDP +GVRVWLGTF T
Sbjct: 106 RKRKTRYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGT 143
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 94 RRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTFPT 127
R FRG+R+RPWGKWAAEIRDP +G RVWLGTF T
Sbjct: 109 RHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNT 142
>Os04g0429050
Length = 260
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 93 ARRFRGVRKRPWGKWAAEIRDPVRGVRVWLGTFPT 127
AR++RGVR+RPWGKWAAEIRDP R RVWLGTF T
Sbjct: 76 ARKYRGVRRRPWGKWAAEIRDPHRAARVWLGTFAT 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,696,466
Number of extensions: 269687
Number of successful extensions: 1343
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 20
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)