BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0368400 Os10g0368400|AK120131
(143 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0368400 Similar to Adapter-related protein complex 4 s... 294 1e-80
Os08g0395300 Clathrin adaptor complex, small chain family p... 196 6e-51
Os03g0783700 Similar to Clathrin assembly small subunit pro... 127 4e-30
Os12g0207300 Similar to Clathrin coat assembly protein AP17... 125 1e-29
Os03g0811300 Similar to Clathrin assembly small subunit pro... 119 6e-28
Os03g0228400 Similar to Adapter-related protein complex 3 s... 100 3e-22
>Os10g0368400 Similar to Adapter-related protein complex 4 sigma 1 subunit (Sigma
subunit of AP-4) (AP-4 adapter complex sigma subunit)
Length = 143
Score = 294 bits (753), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MGIRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVY 60
MGIRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVY
Sbjct: 1 MGIRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120
RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM
Sbjct: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120
Query: 121 NGCIVETSKQNILAPIHLMEKTS 143
NGCIVETSKQNILAPIHLMEKTS
Sbjct: 121 NGCIVETSKQNILAPIHLMEKTS 143
>Os08g0395300 Clathrin adaptor complex, small chain family protein
Length = 100
Score = 196 bits (497), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/99 (93%), Positives = 96/99 (96%)
Query: 1 MGIRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVY 60
MGIRFV+ VNKQGQTR+AQYYEHLS+DERRALEGEIVRKCLARTD QCSFVEHRNYKVVY
Sbjct: 1 MGIRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNV 99
RRYASLFFLVGVDNDENELAILEFIHL VETMDRHFGNV
Sbjct: 61 RRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
>Os03g0783700 Similar to Clathrin assembly small subunit protein AP19 (Clathrin
assembly protein AP19, small subunit)
Length = 182
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 94/132 (71%)
Query: 1 MGIRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVY 60
+ I FV+++++QG+ R+ ++Y + ER + E+ L R C+FVE + YKVVY
Sbjct: 21 LQINFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVY 80
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120
RRYASL+F + +D ++NEL +LE IH VE +DR+FG+VCELD++F+ K +++L+E+++
Sbjct: 81 RRYASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILI 140
Query: 121 NGCIVETSKQNI 132
G + E+SK+N+
Sbjct: 141 AGELQESSKKNV 152
>Os12g0207300 Similar to Clathrin coat assembly protein AP17 (Clathrin coat
associated protein AP17) (Plasma membrane adaptor AP-2
17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly
protein 2 small chain)
Length = 142
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 95/139 (68%)
Query: 3 IRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVYRR 62
IRF+++ N+QG+TR+A+YY L E+ +E E+ R + R +FVE R +KV+YRR
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122
YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ KV+ +L+E ++ G
Sbjct: 62 YAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
Query: 123 CIVETSKQNILAPIHLMEK 141
+ ETSK+ I+ + +EK
Sbjct: 122 ELQETSKRAIIERMGELEK 140
>Os03g0811300 Similar to Clathrin assembly small subunit protein AP19 (Clathrin
assembly protein AP19, small subunit)
Length = 169
Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 89/131 (67%)
Query: 3 IRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVVYRR 62
I FV+++++QG+ R+ ++Y ER + E+ L R C+FV+ Y+VVY+R
Sbjct: 10 IHFVLLISRQGKVRLTKWYNPYPQKERSKVIKEVSTLVLTRGPKMCNFVDWHGYRVVYKR 69
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122
YASL+F + +D +NEL L+ IH VE +DR+FGNVCELD++F+ K +F+L+E+++ G
Sbjct: 70 YASLYFCMCIDAADNELETLQIIHHFVEILDRYFGNVCELDLIFNFHKAYFILDEVLIAG 129
Query: 123 CIVETSKQNIL 133
+ E++K+ +L
Sbjct: 130 ELQESNKKAVL 140
>Os03g0228400 Similar to Adapter-related protein complex 3 sigma 2 subunit
(Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit)
(Sigma-3B-adaptin)
Length = 166
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 88/136 (64%), Gaps = 5/136 (3%)
Query: 3 IRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVE-----HRNYK 57
I+ V++++ QG+ R+ ++Y + ++ + L + + AR D +FV+ K
Sbjct: 2 IQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAK 61
Query: 58 VVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEE 117
+VY+ A+L+F+ D+ ENELA+L+ + + VET+DR F NVCELDI+F+ K+H +L+E
Sbjct: 62 LVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILDE 121
Query: 118 MVMNGCIVETSKQNIL 133
M++ G ++ETS + I+
Sbjct: 122 MILGGQVIETSSEQIM 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,173,375
Number of extensions: 148241
Number of successful extensions: 447
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 6
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)