Os03g0783700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Clathrin assembly small subunit protein AP19 (Clathrin assembly protein AP19, small subunit).
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Os03g0783700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Clathrin assembly small subunit protein AP19 (Clathrin assembly protein AP19, small subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.78 | 0.219 | 11 | 0.243 | 0.163 | -0.374 | 0.233 | 0.924 | 0.131 | 16 | 24.9 | 1237 | -- | -- |
| 22.08 | 0.219 | 11 | 0.014 | 0.164 | -0.29 | 0.147 | -- | 0.0876 | 16.2 | 24 | 1237 | -- | -- |
| 21.91 | 0.218 | 11 | 0.227 | 0.168 | -0.384 | -- | 0.884 | 0.126 | 16.6 | 25 | 1186 | -- | -- |
| 22.17 | 0.219 | 11.1 | 0.0129 | 0.165 | -0.295 | -- | -- | 0.0838 | 16.2 | 24.1 | 1237 | -- | -- |
| 23.33 | 0.225 | 11 | 0.251 | -- | -0.418 | -- | 0.88 | 0.141 | -- | 24.4 | 1218 | -- | -- |
| 24.89 | 0.234 | 11.1 | -0.0849 | 0.205 | -- | 0.261 | -- | 0.0365 | 15.4 | -- | -- | -- | -- |
| 25.1 | 0.235 | 11.1 | -0.0801 | 0.208 | -- | -- | -- | 0.0381 | 15.6 | -- | -- | -- | -- |
| 23.58 | 0.226 | 11 | 0.0149 | -- | -0.33 | -- | -- | 0.0797 | -- | 24.1 | 1211 | -- | -- |
| 22.17 | 0.219 | 11.1 | -- | 0.165 | -0.292 | -- | -- | 0.0822 | 16.2 | 24.1 | 1224 | -- | -- |
| 27.5 | 0.245 | 11.1 | -0.0888 | -- | -- | -- | -- | 0.0326 | -- | -- | -- | -- | -- |
| 25.27 | 0.235 | 11.1 | -- | 0.209 | -- | -- | -- | 0.047 | 15.6 | -- | -- | -- | -- |
| 23.59 | 0.226 | 11.1 | -- | -- | -0.328 | -- | -- | 0.08 | -- | 24.1 | 1218 | -- | -- |
| 27.71 | 0.246 | 11.1 | -- | -- | -- | -- | -- | 0.0424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 21.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 21.45 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 19 |
| 4 | 21.48 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 5 | 21.55 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 6 | 21.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 21.58 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 19 |
| 9 | 21.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 10 | 21.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 11 | 21.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 13 | 21.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 33 | 21.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 47 | 21.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 74 | 21.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 80 | 21.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 85 | 21.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 87 | 21.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 95 | 21.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 100 | 21.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 102 | 21.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 106 | 21.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 127 | 21.71 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 14 |
| 140 | 21.72 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 157 | 21.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 161 | 21.72 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 171 | 21.73 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 181 | 21.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 190 | 21.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 201 | 21.77 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 232 | 21.79 | wind | 7 | 720 | < th | dose independent | rect. | 17 | 10 |
| 237 | 21.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 241 | 21.80 | wind | 5 | 90 | < th | dose independent | rect. | 16 | 13 |
| 251 | 21.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 265 | 21.81 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 3 |
| 280 | 21.81 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 21 |
| 326 | 21.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 335 | 21.84 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 341 | 21.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 355 | 21.85 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 441 | 21.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 447 | 21.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 462 | 21.92 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 463 | 21.92 | wind | 7 | 720 | < th | dose independent | rect. | 24 | 19 |
| 475 | 21.93 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 520 | 21.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 544 | 21.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 622 | 22.00 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 624 | 22.00 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 627 | 22.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 671 | 22.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 676 | 22.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 681 | 22.02 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 686 | 22.02 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 732 | 22.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 733 | 22.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 788 | 22.06 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 790 | 22.06 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 803 | 22.07 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 811 | 22.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 834 | 22.07 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 837 | 22.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 849 | 22.07 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 863 | 22.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 864 | 22.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 884 | 22.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 887 | 22.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 916 | 22.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 924 | 22.09 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 926 | 22.10 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 946 | 22.11 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 950 | 22.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 955 | 22.11 | humidity | 50 | 720 | > th | dose independent | rect. | 14 | 17 |
| 969 | 22.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 981 | 22.12 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 984 | 22.12 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 20 |