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Os12g0207300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Clathrin coat assembly protein AP17 (Clathrin coat associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly protein 2 small chain).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0147) R2 : 0.0317
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.12 (0.031) R2dN8 : 0.0409 R2N8 : 0.0317
σ : 0.277
deviance : 35.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.78 0.198 10.2 0.141 0.442 -0.00124 -0.331 -1.04 0.0812 5.09 20.6 1569 -- --
19.57 0.206 10.1 0.292 0.437 0.176 -0.404 -- 0.103 5.16 20.26 3116 -- --
17.99 0.198 10.2 0.138 0.439 -0.00988 -- -1.06 0.0832 5 20.6 1415 -- --
18.69 0.201 10.1 0.251 0.423 0.436 -- -- 0.0976 5.03 17.7 2859 -- --
28.04 0.247 10.2 0.142 -- 0.0142 -- -1.08 0.087 -- 20.5 1387 -- --
20.17 0.211 10.1 0.387 0.448 -- -0.366 -- 0.151 5.13 -- -- -- --
20.5 0.212 10.1 0.387 0.445 -- -- -- 0.153 5.02 -- -- -- --
28.05 0.247 10.2 0.234 -- 0.525 -- -- 0.091 -- 17.89 2734 -- --
19.5 0.206 10.2 -- 0.442 0.498 -- -- 0.0602 5.04 16.69 10445 -- --
30.91 0.26 10.1 0.403 -- -- -- -- 0.164 -- -- -- -- --
24.44 0.231 10.1 -- 0.452 -- -- -- 0.11 4.99 -- -- -- --
29.19 0.252 10.2 -- -- 0.594 -- -- 0.0829 -- 17.9 2735 -- --
35.19 0.277 10.1 -- -- -- -- -- 0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.95 temperature 20.0 10 > th dose dependent rect. 9 3
4 17.02 temperature 15.0 270 > th dose independent rect. 11 20
7 17.03 temperature 15.0 270 > th dose independent rect. 10 22
12 17.10 radiation 10.0 30 > th dose independent rect. 9 3
26 17.16 temperature 15.0 90 > th dose dependent rect. 23 13
30 17.18 temperature 15.0 270 > th dose independent rect. 11 11
31 17.20 temperature 15.0 1440 > th dose independent rect. 13 11
32 17.20 radiation 1.0 10 > th dose dependent rect. 9 3
35 17.21 temperature 10.0 43200 > th dose independent rect. 10 3
44 17.23 radiation 1.0 90 > th dose dependent rect. 8 4
47 17.24 temperature 10.0 270 > th dose dependent rect. 21 14
55 17.26 atmosphere 1010.0 90 < th dose independent rect. 12 21
57 17.27 temperature 15.0 270 > th dose independent rect. 19 12
61 17.28 temperature 15.0 720 > th dose independent rect. 19 4
63 17.28 temperature 20.0 720 > th dose independent rect. 11 5
67 17.29 radiation 1.0 1440 > th dose independent rect. 10 3
85 17.31 temperature 15.0 270 > th dose dependent rect. 17 19
109 17.39 temperature 25.0 270 > th dose independent rect. 8 3
118 17.41 radiation 40.0 10 < th dose independent rect. 12 21
139 17.44 radiation 1.0 90 > th dose dependent rect. 17 19
152 17.47 temperature 25.0 30 > th dose independent rect. 9 3
158 17.47 radiation 1.0 30 > th dose independent rect. 12 21
173 17.48 wind 5.0 270 < th dose independent rect. 8 2
175 17.48 wind 1.0 90 > th dose independent rect. 9 3
180 17.49 temperature 15.0 90 > th dose independent rect. 9 3
181 17.49 wind 5.0 270 < th dose independent rect. 7 4
222 17.53 radiation 10.0 270 > th dose independent rect. 16 20
229 17.53 atmosphere 995.0 30 > th dose dependent rect. 18 11
236 17.54 precipitation 0.1 30 < th dose independent rect. 12 21
242 17.54 precipitation 0.1 30 < th dose dependent rect. 12 21
246 17.55 atmosphere 995.0 90 > th dose independent rect. 9 3
247 17.55 atmosphere 1015.0 90 < th dose independent rect. 9 3
248 17.55 precipitation 0.1 90 < th dose independent rect. 9 3
255 17.55 precipitation 0.1 90 < th dose dependent rect. 9 3
276 17.56 humidity 90.0 30 < th dose independent rect. 9 3
278 17.56 temperature 15.0 270 > th dose independent rect. 7 4
289 17.57 temperature 10.0 1440 > th dose independent rect. 10 3
293 17.57 atmosphere 995.0 1440 > th dose independent rect. 10 3
296 17.57 temperature 10.0 1440 > th dose independent rect. 13 21
316 17.58 precipitation 0.1 270 < th dose independent rect. 7 4
317 17.58 wind 9.0 720 < th dose independent rect. 7 12
322 17.58 precipitation 0.1 270 < th dose dependent rect. 7 4
334 17.59 humidity 50.0 270 > th dose independent rect. 8 2
344 17.59 humidity 50.0 270 > th dose independent rect. 7 4
345 17.59 atmosphere 995.0 270 > th dose independent rect. 7 4
346 17.59 atmosphere 1015.0 270 < th dose independent rect. 7 4
352 17.59 atmosphere 1015.0 90 < th dose dependent rect. 9 3
365 17.60 wind 7.0 10 < th dose independent rect. 9 3
395 17.61 humidity 60.0 90 > th dose independent rect. 12 21
397 17.61 wind 9.0 270 < th dose dependent rect. 7 4
453 17.63 atmosphere 995.0 270 > th dose independent rect. 11 20
462 17.64 temperature 25.0 270 > th dose independent rect. 23 12
480 17.65 wind 7.0 270 < th dose independent rect. 22 13
481 17.65 atmosphere 1000.0 30 > th dose independent rect. 5 13
522 17.67 wind 9.0 30 < th dose independent rect. 12 21
544 17.68 wind 1.0 30 > th dose independent rect. 18 11
562 17.68 wind 5.0 90 < th dose independent rect. 8 21
564 17.68 wind 9.0 270 < th dose dependent rect. 8 2
597 17.68 temperature 10.0 90 > th dose dependent rect. 7 22
660 17.70 temperature 15.0 90 > th dose dependent rect. 8 19
666 17.71 temperature 15.0 4320 > th dose independent rect. 6 3
668 17.71 precipitation 0.1 1440 < th dose independent rect. 10 3
674 17.71 temperature 15.0 1440 > th dose independent rect. 13 6
677 17.71 precipitation 0.1 1440 < th dose dependent rect. 10 3
683 17.71 temperature 10.0 270 > th dose dependent rect. 7 16
684 17.71 temperature 15.0 10 > th dose dependent rect. 18 20
687 17.72 temperature 20.0 1440 > th dose independent rect. 21 1
698 17.72 temperature 25.0 1440 < th dose dependent rect. 20 1
715 17.72 temperature 15.0 10 > th dose dependent rect. 9 20
727 17.73 temperature 25.0 1440 < th dose dependent rect. 18 4
774 17.74 wind 9.0 720 < th dose independent rect. 23 20
785 17.74 humidity 50.0 43200 < th dose dependent rect. 20 9
789 17.74 radiation 40.0 10 < th dose dependent rect. 5 13
791 17.74 temperature 10.0 270 > th dose dependent rect. 6 19
794 17.74 temperature 10.0 90 > th dose dependent rect. 5 23
805 17.75 atmosphere 1010.0 720 < th dose independent rect. 11 4
814 17.75 precipitation 0.1 270 < th dose independent rect. 10 22
834 17.75 precipitation 0.1 270 < th dose dependent rect. 10 22
859 17.76 radiation 40.0 10 < th dose independent rect. 5 13
864 17.76 temperature 20.0 1440 > th dose independent rect. 12 18
953 17.78 atmosphere 1010.0 270 < th dose independent rect. 20 11
955 17.78 temperature 10.0 270 > th dose independent rect. 22 13
956 17.78 atmosphere 995.0 270 > th dose independent rect. 22 13
958 17.78 temperature 20.0 1440 < th dose independent rect. 12 18
972 17.78 temperature 25.0 90 > th dose dependent sin 7 NA
988 17.79 temperature 20.0 1440 < th dose independent rect. 21 2
992 17.79 wind 7.0 30 < th dose independent rect. 18 11