BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0207300 Os12g0207300|AK069232
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143 276 3e-75
AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163 168 1e-42
AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162 167 1e-42
AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144 127 3e-30
AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167 112 4e-26
>AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143
Length = 142
Score = 276 bits (706), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 136/142 (95%), Positives = 139/142 (97%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60
Query: 61 RYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61 RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GELQETSKRAIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142
>AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163
Length = 162
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 103/141 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NFVE+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60
Query: 61 RYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F MC+D DNEL LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 121 GELQETSKRAIIERMGELEKL 141
GELQE+SK+ + + ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141
>AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162
Length = 161
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 103/141 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NF+E+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60
Query: 61 RYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F MC+D DNEL LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61 RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 121 GELQETSKRAIIERMGELEKL 141
GELQE+SK+ + + ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141
>AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144
Length = 143
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 95/139 (68%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
IRFIL+ N+QG+TRLA+YY L E+ +E E+ R + R+ + +FVE R +K++YRR
Sbjct: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62
Query: 62 YAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ K + +L+E ++ G
Sbjct: 63 YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
Query: 122 ELQETSKRAIIERMGELEK 140
+ ETSK I+ + ++K
Sbjct: 123 CIVETSKANILSPIQLMDK 141
>AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167
Length = 166
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT-----H 55
MI+ +++ N QGK RLAK+Y L ++ ++ V ++ +R +NF+E +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 56 KVIYRRYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 115
+++Y+ YA L+F + D ++NELA L+ I + VE LD FSNVCELD+VFN+ K++ +LD
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 116 EFILAGELQETSKRAIIERMGELEKLE 142
E + G++ ETS +++ + E+ KLE
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLE 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.145 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,049,589
Number of extensions: 123742
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 5
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)