BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0563300 Os09g0563300|AK068277
(408 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0563300 Similar to RuBisCO subunit binding-protein alp... 712 0.0
Os12g0277500 Similar to RuBisCO subunit binding-protein alp... 456 e-128
Os02g0102900 Similar to RuBisCO subunit binding-protein bet... 300 1e-81
Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (... 292 4e-79
AK108892 291 7e-79
Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza ... 267 1e-71
Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (jap... 265 6e-71
AK109517 263 2e-70
Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial p... 259 3e-69
AK063576 210 2e-54
AK068562 160 2e-39
>Os09g0563300 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 408
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/392 (93%), Positives = 366/392 (93%)
Query: 1 ISFSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYIS 60
ISFSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYIS
Sbjct: 1 ISFSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYIS 60
Query: 61 PHFITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYST 120
PHFITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYST
Sbjct: 61 PHFITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYST 120
Query: 121 XXXXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQ 180
KCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQ
Sbjct: 121 LVLNKLNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQ 180
Query: 181 KXXXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKV 240
K AHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKV
Sbjct: 181 KITITSDTTTIIAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKV 240
Query: 241 GAATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIG 300
GAATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIG
Sbjct: 241 GAATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIG 300
Query: 301 VNIVGKALLVPAMTIARNAGADGPAVVEKLLASEWRVGYNAMTDKFEDLVDAGVVDPCRV 360
VNIVGKALLVPAMTIARNAGADGPAVVEKLLASEWRVGYNAMTDKFEDLVDAGVVDPCRV
Sbjct: 301 VNIVGKALLVPAMTIARNAGADGPAVVEKLLASEWRVGYNAMTDKFEDLVDAGVVDPCRV 360
Query: 361 ARCVLQNSASIAGLILMTQAMMFDKIKKKKST 392
ARCVLQNSASIAGLILMTQAMMFDKIKKKKST
Sbjct: 361 ARCVLQNSASIAGLILMTQAMMFDKIKKKKST 392
>Os12g0277500 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 578
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/387 (56%), Positives = 286/387 (73%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
AVASISAGNDE +G +IADA++K+GPDG++ IESSSS T+V+V+EGM+ID+GYISP
Sbjct: 179 IKAVASISAGNDELIGSMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQ 238
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
F+TN +K+IVEFENA+VL+TDQ++ ++EILP+LEKTTQL PL IIAED++ +T
Sbjct: 239 FVTNLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLV 298
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K P G+ +KA+LQDIAI+TGA+F A DLG ++ AT +QLG A+K
Sbjct: 299 VNKLRGILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKV 358
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
A + + EI+AR+ QLKK+L ET S Y E+ + RIAKLS G+AVIKVGA
Sbjct: 359 TIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGA 418
Query: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
ATE ELEDR+LR EDAKNATFAAI EGI PGGG YV LS +P+I + ++D +E++G +
Sbjct: 419 ATETELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETIEDHDERLGAD 478
Query: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASEWRVGYNAMTDKFEDLVDAGVVDPCRVAR 362
I+ KAL+ PA IA NAG +G VVEK+ EW VGYNAM DK+E+L++AGV+DP +V R
Sbjct: 479 IIQKALVAPASLIAHNAGVEGEVVVEKIKDGEWEVGYNAMNDKYENLIEAGVIDPAKVTR 538
Query: 363 CVLQNSASIAGLILMTQAMMFDKIKKK 389
C LQN+AS+AG++L TQA++ +K K K
Sbjct: 539 CALQNAASVAGMVLTTQAIVVEKPKPK 565
>Os02g0102900 Similar to RuBisCO subunit binding-protein beta subunit,
chloroplast (60 kDa chaperonin beta subunit) (CPN-60
beta) (Fragment)
Length = 598
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 237/380 (62%), Gaps = 1/380 (0%)
Query: 6 VASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPHFIT 65
VA++SAGN+ +G++IA+A+ K+G G++ +E S ++ V EGM+ D+GYISP+F+T
Sbjct: 198 VAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVT 257
Query: 66 NQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXXXXX 125
+ +K VE+EN ++LL D+++++ ++++ +LE + P+LI+ ED+ +T
Sbjct: 258 DSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNR 317
Query: 126 XXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKXXXX 185
K PG G+ K L DIA +TG ++G L A D LG A K
Sbjct: 318 LRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVT 377
Query: 186 XXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGAATE 245
+ + E+ R+ Q+K +E Y KE+ + RIAKLS G+AVI+VGA TE
Sbjct: 378 KDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTE 437
Query: 246 AELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVNIVG 305
EL+++KLR EDA NAT AA+ EGI GGG T ++L+ + +I++ +++ E+K+G IV
Sbjct: 438 TELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIIETLENDEQKVGAEIVR 497
Query: 306 KALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVARCV 364
K+L P IA+NAG +G V EK+LA++ +R GYNA T K+EDL+ AG++DP +V RC
Sbjct: 498 KSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCC 557
Query: 365 LQNSASIAGLILMTQAMMFD 384
L+++AS+A + + A++ D
Sbjct: 558 LEHAASVAKTFITSDAVVVD 577
>Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63
kDa stress protein) (GSP63)
Length = 601
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 237/380 (62%), Gaps = 1/380 (0%)
Query: 6 VASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPHFIT 65
VA++SAGN+ +G++IA+A+ K+G G++ +E S ++ V EGM+ ++GYISP+F+T
Sbjct: 202 VAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVT 261
Query: 66 NQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXXXXX 125
+ +K E+EN ++LL D+++ + ++++ +LE+ + + P+LIIAED+ +T
Sbjct: 262 DSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNK 321
Query: 126 XXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKXXXX 185
K PG G+ K L DIAI+TGA ++G L A LG A K
Sbjct: 322 LRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLN 381
Query: 186 XXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGAATE 245
S + E+ R+ Q+K +E Y KE+ + RIAKL+ G+AVI+VGA TE
Sbjct: 382 KESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTE 441
Query: 246 AELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVNIVG 305
EL+++KLR EDA NAT AA+ EGI GGG T ++L+ + +I D +++ E+K+G IV
Sbjct: 442 TELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVR 501
Query: 306 KALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVARCV 364
+AL P IA+NAG +G V EK+L+++ ++ GYNA T ++EDL+ AG++DP +V RC
Sbjct: 502 RALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCC 561
Query: 365 LQNSASIAGLILMTQAMMFD 384
L+++AS+A L + ++ +
Sbjct: 562 LEHAASVAKTFLTSDVVVVE 581
>AK108892
Length = 573
Score = 291 bits (745), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 1/376 (0%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
+ VAS+SAG + +G LIADA+ K+G G++ +E S + ++ EGM+ D+GY SP+
Sbjct: 173 LANVASVSAGGNAEIGQLIADAMAKVGRQGVVTMEESKTAEDNLVFVEGMQFDRGYYSPY 232
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
F+T+ ++ + E+EN RVLL D+++ ++++ LLE + + PLLI+AEDV +T
Sbjct: 233 FVTDPERMVAEYENCRVLLVDKKISTARDVIGLLEAAIRGNYPLLIMAEDVEQEALATLV 292
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K PG G+ K + L+DIAI+TG +LG L A LG+A K
Sbjct: 293 VNKLRGTLKVVAVKAPGFGERKTSYLEDIAILTGGTLVKDELGVTLDKADESVLGVAAKV 352
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
+ +++ R++Q++ E+T Y KE+ + RIA+LS G+A+I+VGA
Sbjct: 353 VISKEACTIVGDGRSQADVDTRVKQIRNLAEQTEQEYEKEKLNERIARLSGGVAIIQVGA 412
Query: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
TE EL+++KLR EDA NAT AA+ EGI GGG T ++L+ + ++ + + + E+K+G
Sbjct: 413 QTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLKLAAKVDTVKESLSNEEQKVGAE 472
Query: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVA 361
IV KAL P IA NAG +G V++K++ S+ GYNA DKFEDL+ +G++DP +V
Sbjct: 473 IVKKALTYPLKLIAENAGTNGSVVMQKVIDSQDPNYGYNAAIDKFEDLMQSGIIDPTKVI 532
Query: 362 RCVLQNSASIAGLILM 377
RC L+N+ S+A L+
Sbjct: 533 RCALENACSVAKTFLL 548
>Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 577
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 226/383 (59%), Gaps = 3/383 (0%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
+ V +ISA + +G+LIA A+EK+G +G+I I +++Y +EV EGMK+D+GYISP+
Sbjct: 175 IAQVGTISANGEREIGELIAKAMEKVGKEGVITITDGNTLYNELEVVEGMKLDRGYISPY 234
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
FITNQ E ++ +L+ D++V ++ ++ +LE + PLLI+AEDV T
Sbjct: 235 FITNQKNQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLI 294
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K PG G+ +KA LQD+AI+TG + +LG L+ LG +K
Sbjct: 295 INKLRAGIKVCAVKAPGFGESRKANLQDLAILTGGEVITEELGMNLENFEPQMLGTCKKV 354
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
+ IE R +QL+ +E +TS Y KE+ R+AKLS G+AV+K+G
Sbjct: 355 TVSKDDTVILDGAGDKKAIEERAEQLRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGG 414
Query: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
A+EAE+ ++K R DA NAT AA+ EGI PGGGV + SK + + + ++KIGV
Sbjct: 415 ASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKDLDKLQ--TANFDQKIGVQ 472
Query: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVA 361
I+ AL P TIA NAG +G ++ KLL + +GY+A ++ D+V +G++DP +V
Sbjct: 473 IIQNALKTPVHTIASNAGVEGSVIIGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVI 532
Query: 362 RCVLQNSASIAGLILMTQAMMFD 384
R L ++AS++ L+ T++++ +
Sbjct: 533 RTALVDAASVSSLMTTTESIIVE 555
>Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 574
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 229/389 (58%), Gaps = 3/389 (0%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
+ V +ISA + +G+LIA A+EK+G +G+I I +++Y +EV EGMK+D+GYISP+
Sbjct: 175 IAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPY 234
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
F+TN E ++ +L+ D++V ++ ++ +LE + PLLI+AEDV T
Sbjct: 235 FVTNPKTQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLI 294
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K PG G+ +KA LQD+AI+TG + +LG L+ LG +K
Sbjct: 295 INKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKV 354
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
+ IE R +Q++ +E +TS Y KE+ R+AKLS G+AV+K+G
Sbjct: 355 TVSKDDTVILDGAGDKKSIEERAEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGG 414
Query: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
A+EAE+ ++K R DA NAT AA+ EGI PGGGV + SK + + + ++KIGV
Sbjct: 415 ASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLP--TANFDQKIGVQ 472
Query: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVA 361
I+ AL P TIA NAG +G VV KLL + +GY+A ++ D+V AG++DP +V
Sbjct: 473 IIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKAGIIDPLKVI 532
Query: 362 RCVLQNSASIAGLILMTQAMMFDKIKKKK 390
R L ++AS++ L+ T++++ + K++K
Sbjct: 533 RTALVDAASVSSLMTTTESIIVEIPKEEK 561
>AK109517
Length = 574
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 227/385 (58%), Gaps = 3/385 (0%)
Query: 7 ASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPHFITN 66
+ISA + +G+LIA A+EK+G +G+I I +++Y +EV EGMK+D+GYISP+F+TN
Sbjct: 179 GTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTN 238
Query: 67 QDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXXXXXX 126
E ++ +L+ D++V ++ ++ +LE + PLLI+AEDV T
Sbjct: 239 PKTQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEASGTLIINKL 298
Query: 127 XXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKXXXXX 186
K PG G+ +KA LQD+AI+TG + +LG L+ LG +K
Sbjct: 299 RAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSK 358
Query: 187 XXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGAATEA 246
+ IE R +Q++ +E +TS Y KE+ R+AKLS G+AV+K+G A+EA
Sbjct: 359 DDTVILDGAGDKKSIEERAEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 418
Query: 247 ELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVNIVGK 306
E+ ++K R DA NAT AA+ EGI PGGGV + SK + + + ++KIGV I+
Sbjct: 419 EVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLP--TANFDQKIGVQIIQN 476
Query: 307 ALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVARCVL 365
AL P TIA NAG +G VV KLL + +GY+A ++ D+V AG++DP +V R L
Sbjct: 477 ALKTPVHTIASNAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTAL 536
Query: 366 QNSASIAGLILMTQAMMFDKIKKKK 390
++AS++ L+ T++++ + K++K
Sbjct: 537 VDAASVSSLMTTTESIIVEIPKEEK 561
>Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 581
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 224/377 (59%), Gaps = 5/377 (1%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
+ VA+ISA ++ +GDLI+ A+EK+G DG+I I ++ +E +GMK+ +GYISP+
Sbjct: 181 INQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPY 240
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
F+T+Q E EN +L+ D+++ + +LP+LE + + PLLIIAEDV S
Sbjct: 241 FVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLV 300
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K PG G+ ++A L D+A++TG + + D G L LG A+K
Sbjct: 301 LNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKV 360
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
+ +IE R QQL++ ++++T+ + KE+ R++KLS G+AV+K+G
Sbjct: 361 TVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGG 420
Query: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
A+E E+ ++K R DA +A AA+ EGI PGGGV + +K + I+ +D EKIGV
Sbjct: 421 ASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANED--EKIGVQ 478
Query: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVA 361
I+ AL P MTIA NAG DG V+ KL+ + +GY+A ++ D++ AG++DP +V
Sbjct: 479 IIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVI 538
Query: 362 RCVLQNSASIAGLILMT 378
R LQ+++S++ +LMT
Sbjct: 539 RTALQDASSVS--LLMT 553
>AK063576
Length = 353
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 196/340 (57%), Gaps = 5/340 (1%)
Query: 56 KGYISPHFITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKT-TQLSVPLLIIAEDVS 114
+G+ISP+FIT+ E E +L+TD ++ +I+P+L+ ++ PLLIIAEDV
Sbjct: 1 RGFISPYFITDPKTQKCELEKPLILVTDSKLSSNSQIIPVLQNAISKHQRPLLIIAEDVD 60
Query: 115 HTVYSTXXXXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSD 174
+T K PG GD +K LQDIAI+TGA DLG L+ S
Sbjct: 61 SDALTTLVLNRIRAGAKVCAVKAPGFGDHRKNNLQDIAIVTGATLVTEDLGLKLEALESA 120
Query: 175 QLGMAQKXXXXXXXXXXXAHPSMRPEIEARIQQLKKDLE-ETTSAYLKERFSSRIAKLSR 233
LG A+K + I R +Q+++ L+ E S + KE++ R+AKLS
Sbjct: 121 WLGTAEKVSVSKDDTLILHGGGDKQSINERCEQIREHLKIEGVSEFEKEKYQERLAKLSG 180
Query: 234 GIAVIKVGAATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVD 293
G+AV+K+G A+E E+ ++K R DA NAT AA+ EGI GGG + S + +
Sbjct: 181 GVAVLKIGGASEVEVGEKKDRVTDALNATKAAVEEGIVAGGGTALIIASLKLAQLE--AK 238
Query: 294 DSEEKIGVNIVGKALLVPAMTIARNAGADGPAVVEKLLA-SEWRVGYNAMTDKFEDLVDA 352
+ +++ G++IV +A+ P TIA NAG +G VVEK++ + ++GYNA T+++ ++ +A
Sbjct: 239 NFDQRTGIDIVRRAVRKPLKTIANNAGVEGDVVVEKVIQMNNPKMGYNAATNEYVNMFEA 298
Query: 353 GVVDPCRVARCVLQNSASIAGLILMTQAMMFDKIKKKKST 392
GV+DP +V + L ++AS+A L+ T+A++ D KK++ +
Sbjct: 299 GVIDPTKVVKTALVDAASVASLMTTTEAIVTDLPKKEEHS 338
>AK068562
Length = 420
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 135/246 (54%)
Query: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
+ VA++SAG+D VG++I+DA +++G G+++IE+ +E+ EGM+ ++GY+SP+
Sbjct: 175 IAHVAAVSAGDDYAVGNMISDAFKRVGRKGMVRIENGRGTENGLEIVEGMQFERGYLSPY 234
Query: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTXX 122
F+T+ EF + ++LL D+++ D EI+ +L+ + PLLI+AEDV +
Sbjct: 235 FVTDCTNMSAEFTDCKILLVDKKITDASEIIRILDSAVKEDYPLLIVAEDVEEKAMADLI 294
Query: 123 XXXXXXXXXXXXXKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKX 182
K P G++ L DIAIMTG D+G+ L+ A + LG A K
Sbjct: 295 KNKLKGTIKVAAIKAPSFGEQMTQCLDDIAIMTGGTLVREDMGYTLEKAGKEVLGSASKV 354
Query: 183 XXXXXXXXXXAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
S + IE R+ Q+K +E ++ Y K+ RIA+L GIA+I+VGA
Sbjct: 355 VVGKDSTLIVTDGSTQHVIEKRVAQIKGQIENSSERYQKKILGERIARLCGGIAIIQVGA 414
Query: 243 ATEAEL 248
T E+
Sbjct: 415 QTIIEM 420
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,887,217
Number of extensions: 404145
Number of successful extensions: 1086
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 11
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)