Os03g0143400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)].
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Os03g0143400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 309.17 | 0.826 | 3.44 | 0.969 | 0.674 | 1.41 | 2.29 | 1.06 | -0.0762 | 15.4 | 25.42 | 40 | -- | -- |
| 309.58 | 0.819 | 3.45 | 0.891 | 0.665 | 1.49 | 2.35 | -- | -0.0983 | 15.3 | 25.4 | 40 | -- | -- |
| 322.86 | 0.843 | 3.41 | 1.27 | 0.7 | 1.35 | -- | 3.56 | -0.00493 | 16.3 | 25.42 | 40 | -- | -- |
| 326.94 | 0.842 | 3.46 | 0.873 | 0.595 | 1.71 | -- | -- | -0.101 | 16 | 25.5 | 38 | -- | -- |
| 337.45 | 0.856 | 3.42 | 1.15 | -- | 1.93 | -- | 3.43 | -0.0767 | -- | 24.9 | 40 | -- | -- |
| 342.56 | 0.868 | 3.44 | 1.07 | 1.23 | -- | 2.96 | -- | -0.019 | 15.4 | -- | -- | -- | -- |
| 369.56 | 0.9 | 3.43 | 1.13 | 1.25 | -- | -- | -- | -0.00127 | 15.7 | -- | -- | -- | -- |
| 341.25 | 0.86 | 3.46 | 0.778 | -- | 2.15 | -- | -- | -0.183 | -- | 25 | 55 | -- | -- |
| 346.02 | 0.866 | 3.48 | -- | 0.532 | 1.9 | -- | -- | -0.212 | 16.3 | 25.38 | 39 | -- | -- |
| 456.31 | 0.998 | 3.43 | 1.08 | -- | -- | -- | -- | -0.0346 | -- | -- | -- | -- | -- |
| 403.05 | 0.939 | 3.46 | -- | 1.23 | -- | -- | -- | -0.127 | 15.7 | -- | -- | -- | -- |
| 356.14 | 0.879 | 3.49 | -- | -- | 2.3 | -- | -- | -0.276 | -- | 25 | 41 | -- | -- |
| 486.8 | 1.03 | 3.46 | -- | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 298.52 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 2 | 298.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 21 |
| 3 | 298.98 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 20 | 300.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 26 | 300.67 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 170 | 305.43 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 219 | 306.19 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 243 | 306.58 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 256 | 306.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 335 | 308.13 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 10 |
| 356 | 308.32 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 8 |
| 419 | 308.86 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 553 | 309.87 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 606 | 310.32 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 667 | 310.68 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 8 |
| 758 | 311.21 | temperature | 30 | 90 | > th | dose independent | sin | 3 | NA |
| 909 | 312.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |