Os02g0102900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RuBisCO subunit binding-protein beta subunit, chloroplast (60 kDa chaperonin beta subunit) (CPN-60 beta) (Fragment).
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Os02g0102900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RuBisCO subunit binding-protein beta subunit, chloroplast (60 kDa chaperonin beta subunit) (CPN-60 beta) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.53 | 0.462 | 8.56 | 0.0715 | 1.49 | -2.3 | 0.331 | -0.836 | 0.0273 | 10.9 | 29.5 | 30 | -- | -- |
| 97.26 | 0.459 | 8.57 | -0.0622 | 1.54 | -2.27 | 0.552 | -- | -0.00108 | 10.9 | 29.34 | 51 | -- | -- |
| 96.79 | 0.458 | 8.55 | 0.111 | 1.5 | -2.34 | -- | -1.13 | 0.0275 | 10.8 | 29.29 | 41 | -- | -- |
| 98.48 | 0.462 | 8.57 | -0.0691 | 1.53 | -2.32 | -- | -- | -0.0112 | 10.8 | 29.41 | 52 | -- | -- |
| 205.88 | 0.672 | 8.63 | -0.107 | -- | -3.32 | -- | -1.16 | -0.148 | -- | 29.66 | 11 | -- | -- |
| 167.32 | 0.606 | 8.47 | 0.467 | 2.05 | -- | 0.951 | -- | 0.454 | 12.1 | -- | -- | -- | -- |
| 171.19 | 0.613 | 8.47 | 0.504 | 2.05 | -- | -- | -- | 0.458 | 12 | -- | -- | -- | -- |
| 207.82 | 0.674 | 8.65 | -0.302 | -- | -3.32 | -- | -- | -0.201 | -- | 29.66 | 11 | -- | -- |
| 98.58 | 0.462 | 8.57 | -- | 1.53 | -2.29 | -- | -- | 0.00166 | 10.8 | 29.4 | 53 | -- | -- |
| 436.05 | 0.976 | 8.51 | 0.44 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 177.88 | 0.624 | 8.48 | -- | 2.04 | -- | -- | -- | 0.402 | 12 | -- | -- | -- | -- |
| 210.09 | 0.677 | 8.64 | -- | -- | -3.24 | -- | -- | -0.154 | -- | 29.66 | 11 | -- | -- |
| 441.15 | 0.98 | 8.52 | -- | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.39 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 14 | 85.76 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 33 | 89.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 52 | 94.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 63 | 96.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 66 | 96.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 70 | 96.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 96.78 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 79 | 97.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 80 | 97.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 86 | 97.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 89 | 97.56 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 92 | 97.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 111 | 98.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 113 | 98.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 149 | 100.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 174 | 101.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 203 | 102.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 229 | 103.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 232 | 103.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 247 | 103.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 251 | 103.97 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 277 | 104.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 290 | 105.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 338 | 105.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 380 | 106.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 396 | 106.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 444 | 107.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 506 | 108.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 545 | 109.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 582 | 109.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 584 | 109.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 725 | 111.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 14 |