BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0102900 Os02g0102900|AK070603
(598 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0102900 Similar to RuBisCO subunit binding-protein bet... 1156 0.0
Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (... 984 0.0
AK108892 730 0.0
AK068562 512 e-145
Os12g0277500 Similar to RuBisCO subunit binding-protein alp... 509 e-144
Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (jap... 488 e-138
AK109517 483 e-136
Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza ... 462 e-130
Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial p... 449 e-126
Os09g0563300 Similar to RuBisCO subunit binding-protein alp... 296 3e-80
AK063576 281 7e-76
Os03g0859600 Similar to RuBisCO subunit binding-protein alp... 155 1e-37
Os12g0228400 Similar to mitochondrial chaperonin-60 [Oryza ... 75 1e-13
>Os02g0102900 Similar to RuBisCO subunit binding-protein beta subunit,
chloroplast (60 kDa chaperonin beta subunit) (CPN-60
beta) (Fragment)
Length = 598
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/598 (97%), Positives = 582/598 (97%)
Query: 1 MASAFGSTSACGIKITPTAFATKKHLCLXXXXXXSLPRKNRPQRKCNFRVNAAKELYFNK 60
MASAFGSTSACGIKITPTAFATKKHLCL SLPRKNRPQRKCNFRVNAAKELYFNK
Sbjct: 1 MASAFGSTSACGIKITPTAFATKKHLCLVPPPVVSLPRKNRPQRKCNFRVNAAKELYFNK 60
Query: 61 DGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVEN 120
DGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVEN
Sbjct: 61 DGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVEN 120
Query: 121 IGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALV 180
IGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALV
Sbjct: 121 IGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALV 180
Query: 181 SELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYV 240
SELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYV
Sbjct: 181 SELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYV 240
Query: 241 VEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILI 300
VEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILI
Sbjct: 241 VEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILI 300
Query: 301 VTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSL 360
VTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSL
Sbjct: 301 VTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSL 360
Query: 361 DKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERI 420
DKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERI
Sbjct: 361 DKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERI 420
Query: 421 AKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLASKVDAI 480
AKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRLASKVDAI
Sbjct: 421 AKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAI 480
Query: 481 IETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYE 540
IETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYE
Sbjct: 481 IETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYE 540
Query: 541 DLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAAGNPMGGSGFGF 598
DLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAAGNPMGGSGFGF
Sbjct: 541 DLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAAGNPMGGSGFGF 598
>Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63
kDa stress protein) (GSP63)
Length = 601
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/602 (82%), Positives = 537/602 (89%), Gaps = 5/602 (0%)
Query: 1 MASAFGSTSACGIKITPTAFATKKH----LCLXXXXXXSLPRKNRPQRKCNFRVNAAKEL 56
MAS FG+TS G+ PT + K + S PR R QRKCNFRV AAKEL
Sbjct: 1 MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKEL 60
Query: 57 YFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELED 116
YFNKDG AIKKLQ GVNKLADLVGVTLGPKGRNVVLESKYGSP+IVNDGVTVA+EVELED
Sbjct: 61 YFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELED 120
Query: 117 PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTA 176
PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG+I EGVKVVAAGANPVQITRGIEKTA
Sbjct: 121 PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTA 180
Query: 177 KALVSELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAEN 236
KALV EL+K+SKEVEDSELADVAAVSAGNNYEIGNMIAEAM+KVGR+GVVTLEEG+S+EN
Sbjct: 181 KALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSEN 240
Query: 237 NLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGY 296
NLYVVEGMQF+RGYISPYFVTDSEKMS EYENCKLLLVDKKI NARDLI +LE+AIRG Y
Sbjct: 241 NLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAY 300
Query: 297 PILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEV 356
PILI+ EDIEQEALATLVVN+LRG+LKIAAIKAPGFGERK+QYLDDIA LTG TVIR+EV
Sbjct: 301 PILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEV 360
Query: 357 GLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKL 416
GLSLDKAD+ VLGTAAKVV+ K+STTIVGDG+TQ+EV KRV QIKN IE AEQEYEKEKL
Sbjct: 361 GLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKL 420
Query: 417 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLASK 476
NERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRLA++
Sbjct: 421 NERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAR 480
Query: 477 VDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAAT 536
VDAI + LENDEQKVGAEIVR++LSYPLKLIAKNAGVNGSVVTEKVL+NDNF++GYNAAT
Sbjct: 481 VDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAAT 540
Query: 537 GKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAAGNPMGGSGF 596
G+YEDLMAAGIIDPTKVVRCCLEHAASVAKTF+TSD VVV+IKEPE A NPM SG+
Sbjct: 541 GQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEPAPVT-NPMDNSGY 599
Query: 597 GF 598
G+
Sbjct: 600 GY 601
>AK108892
Length = 573
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/545 (68%), Positives = 455/545 (83%), Gaps = 1/545 (0%)
Query: 37 PRKNRPQRKCNFRVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKY 96
P + + + + V AAK+L+FNK+ A+KK+Q G +KLA +VGVTLGPKGRNVVLESKY
Sbjct: 14 PARVVSKSRKHHVVRAAKDLHFNKNMEALKKMQAGADKLATVVGVTLGPKGRNVVLESKY 73
Query: 97 GSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGV 156
GSPKIVNDGVT+A+EVELEDPVENIGAKLVRQAAA+TND AGDGTTT+ +L+ I EG+
Sbjct: 74 GSPKIVNDGVTIAREVELEDPVENIGAKLVRQAAARTNDTAGDGTTTATILSAAFIAEGL 133
Query: 157 KVVAAGANPVQITRGIEKTAKALVSELQKMSKEV-EDSELADVAAVSAGNNYEIGNMIAE 215
K+VAAG NPVQ+TRG++KT ALV EL +S EV D +LA+VA+VSAG N EIG +IA+
Sbjct: 134 KIVAAGTNPVQLTRGMDKTVAALVKELAGLSTEVASDRDLANVASVSAGGNAEIGQLIAD 193
Query: 216 AMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVD 275
AM KVGRQGVVT+EE K+AE+NL VEGMQFDRGY SPYFVTD E+M EYENC++LLVD
Sbjct: 194 AMAKVGRQGVVTMEESKTAEDNLVFVEGMQFDRGYYSPYFVTDPERMVAEYENCRVLLVD 253
Query: 276 KKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGER 335
KKI+ ARD+I +LE AIRG YP+LI+ ED+EQEALATLVVN+LRG LK+ A+KAPGFGER
Sbjct: 254 KKISTARDVIGLLEAAIRGNYPLLIMAEDVEQEALATLVVNKLRGTLKVVAVKAPGFGER 313
Query: 336 KSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNK 395
K+ YL+DIA LTGGT++++E+G++LDKAD VLG AAKVV++K++ TIVGDG +Q +V+
Sbjct: 314 KTSYLEDIAILTGGTLVKDELGVTLDKADESVLGVAAKVVISKEACTIVGDGRSQADVDT 373
Query: 396 RVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK 455
RV QI+N E EQEYEKEKLNERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNATK
Sbjct: 374 RVKQIRNLAEQTEQEYEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATK 433
Query: 456 AAXXXXXXXXXXCTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNG 515
AA CTLL+LA+KVD + E+L N+EQKVGAEIV+K+L+YPLKLIA+NAG NG
Sbjct: 434 AAVEEGIVIGGGCTLLKLAAKVDTVKESLSNEEQKVGAEIVKKALTYPLKLIAENAGTNG 493
Query: 516 SVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVV 575
SVV +KV+ + + YGYNAA K+EDLM +GIIDPTKV+RC LE+A SVAKTF+ +D VV
Sbjct: 494 SVVMQKVIDSQDPNYGYNAAIDKFEDLMQSGIIDPTKVIRCALENACSVAKTFLLADVVV 553
Query: 576 VDIKE 580
+I E
Sbjct: 554 TEIPE 558
>AK068562
Length = 420
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/387 (63%), Positives = 321/387 (82%)
Query: 54 KELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVE 113
K+L+FN+D A KKLQ GV+ +A LVGVTLGPKGRNVVL +KYG PKIVNDG TV KE+E
Sbjct: 34 KDLHFNRDLSATKKLQAGVDLVARLVGVTLGPKGRNVVLSNKYGPPKIVNDGETVLKEIE 93
Query: 114 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIE 173
LEDP+EN+G KLVRQA A+TND+AGDG TTS++LAQG+I EG+KV+AAG NPVQI RGIE
Sbjct: 94 LEDPLENLGVKLVRQAGARTNDVAGDGCTTSIILAQGLIAEGMKVLAAGINPVQIARGIE 153
Query: 174 KTAKALVSELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKS 233
KTA ALVSEL+ MS+E+ED E+A VAAVSAG++Y +GNMI++A +VGR+G+V +E G+
Sbjct: 154 KTASALVSELRLMSREIEDHEIAHVAAVSAGDDYAVGNMISDAFKRVGRKGMVRIENGRG 213
Query: 234 AENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIR 293
EN L +VEGMQF+RGY+SPYFVTD MS E+ +CK+LLVDKKI +A ++I IL+ A++
Sbjct: 214 TENGLEIVEGMQFERGYLSPYFVTDCTNMSAEFTDCKILLVDKKITDASEIIRILDSAVK 273
Query: 294 GGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIR 353
YP+LIV ED+E++A+A L+ N+L+G +K+AAIKAP FGE+ +Q LDDIA +TGGT++R
Sbjct: 274 EDYPLLIVAEDVEEKAMADLIKNKLKGTIKVAAIKAPSFGEQMTQCLDDIAIMTGGTLVR 333
Query: 354 EEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEK 413
E++G +L+KA ++VLG+A+KVVV KDST IV DG+TQ + KRV QIK QIE + + Y+K
Sbjct: 334 EDMGYTLEKAGKEVLGSASKVVVGKDSTLIVTDGSTQHVIEKRVAQIKGQIENSSERYQK 393
Query: 414 EKLNERIAKLSGGVAVIQVGAQTETEL 440
+ L ERIA+L GG+A+IQVGAQT E+
Sbjct: 394 KILGERIARLCGGIAIIQVGAQTIIEM 420
>Os12g0277500 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 578
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 275/567 (48%), Positives = 391/567 (68%), Gaps = 13/567 (2%)
Query: 35 SLPRKNRPQRKCNFRVNA------AKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGR 88
S + R +R N R AK++ F++ A LQ GV KLA+ VGVTLGP+GR
Sbjct: 15 SFSSQGRVRRAKNGRAQRLVVRADAKDIAFDQKSRA--ALQAGVEKLANAVGVTLGPRGR 72
Query: 89 NVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLA 148
NVVL+ +YGSPK+VNDGVT+A+ +EL DP+EN GA L+R+ A+KTND AGDGTTT+ VLA
Sbjct: 73 NVVLD-EYGSPKVVNDGVTIARAIELYDPMENAGAALIREVASKTNDSAGDGTTTASVLA 131
Query: 149 QGMITEGVKVVAAGANPVQITRGIEKTAKALVSELQKMSKEVEDS-ELADVAAVSAGNNY 207
+ +I G+ V +GANPV + +GI+KT L+ EL+K ++ V+ S ++ VA++SAGN+
Sbjct: 132 REIIKLGLLSVTSGANPVSLKKGIDKTVHGLIEELEKKARPVKGSGDIKAVASISAGNDE 191
Query: 208 EIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYE 267
IG+MIA+A++KVG GV+++E S E + V EGM+ DRGYISP FVT+ EK VE+E
Sbjct: 192 LIGSMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEKSIVEFE 251
Query: 268 NCKLLLVDKKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAI 327
N K+L+ D+KI + ++++ ILE + P+ I+ EDI EALATLVVN+LRG L +AAI
Sbjct: 252 NAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVNKLRGILNVAAI 311
Query: 328 KAPGFGERKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDG 387
KAP FGER+ L DIA +TG + +++GL ++ A + LGTA KV + + +TT++ D
Sbjct: 312 KAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTIHQTTTTLIADA 371
Query: 388 TTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRV 447
++DE+ RV Q+K ++ + Y+ EKL ERIAKLSGGVAVI+VGA TETEL++++LR+
Sbjct: 372 ASKDEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAATETELEDRQLRI 431
Query: 448 EDALNATKAAXXXXXXXXXXCTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLI 507
EDA NAT AA + L++ V AI ET+E+ ++++GA+I++K+L P LI
Sbjct: 432 EDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETIEDHDERLGADIIQKALVAPASLI 491
Query: 508 AKNAGVNGSVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKT 567
A NAGV G VV EK+ + + GYNA KYE+L+ AG+IDP KV RC L++AASVA
Sbjct: 492 AHNAGVEGEVVVEKI-KDGEWEVGYNAMNDKYENLIEAGVIDPAKVTRCALQNAASVAGM 550
Query: 568 FITSDAVVVDIKEPEKAAAAGNPMGGS 594
+T+ A+VV+ +P+ A P G+
Sbjct: 551 VLTTQAIVVE--KPKPKAPVAEPAEGT 575
>Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 574
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/549 (47%), Positives = 368/549 (67%), Gaps = 5/549 (0%)
Query: 49 RVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 108
R AAK++ F + A+ + GV +LAD V VT+GPKGRNVV+E YGSPK+ DGVTV
Sbjct: 30 RNYAAKDIKFGVEARAL--MLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTKDGVTV 87
Query: 109 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQI 168
AK +E +D V+N+GA LV+Q A TND AGDGTT + VL + + TEG K VAAG N + +
Sbjct: 88 AKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDL 147
Query: 169 TRGIEKTAKALVSELQKMSKEVEDSE-LADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVT 227
RGI A+V+ L+ M++ + SE +A V +SA EIG +IA+AM KVG++GV+T
Sbjct: 148 RRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVIT 207
Query: 228 LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITI 287
+ +G + N L VVEGM+ DRGYISPYFVT+ + E ++ +L+ DKK++N ++ +
Sbjct: 208 IADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLHAVVKV 267
Query: 288 LEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLT 347
LE A++ P+LIV ED+E EAL TL++N+LR +K+ A+KAPGFGE + L D+A LT
Sbjct: 268 LELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILT 327
Query: 348 GGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVA 407
GG VI EE+G++L+K + +LGT KV V+KD T I+ + + +R QI++ IE++
Sbjct: 328 GGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIELS 387
Query: 408 EQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXX 467
+Y+KEKL ER+AKLSGGVAV+++G +E E+ EKK RV DALNATKAA
Sbjct: 388 TSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG 447
Query: 468 CTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDN 527
LL + ++D + N +QK+G +I++ +L P+ IA NAGV G+VV K+L DN
Sbjct: 448 VALLYASKELDKL--PTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDN 505
Query: 528 FRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAA 587
GY+AA G+Y D++ AGIIDP KV+R L AASV+ T+++++V+I + EK A A
Sbjct: 506 TDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEKEAPA 565
Query: 588 GNPMGGSGF 596
MGG +
Sbjct: 566 MGGMGGMDY 574
>AK109517
Length = 574
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/549 (46%), Positives = 366/549 (66%), Gaps = 5/549 (0%)
Query: 49 RVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 108
R AAK++ F + A+ + GV +LAD V VT+GPKGRNVV+E YGSPK+ DGVTV
Sbjct: 30 RNYAAKDIKFGVEARAL--MLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTKDGVTV 87
Query: 109 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQI 168
AK +E +D V+N+GA LV+Q A TND AGDGTT + VL + + TEG K VAAG N + +
Sbjct: 88 AKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDL 147
Query: 169 TRGIEKTAKALVSELQKMSKEVEDSE-LADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVT 227
RGI A+V+ L+ M++ + SE +A +SA EIG +IA+AM KVG++GV+T
Sbjct: 148 RRGISMAVDAVVTNLKGMARMISTSEEIAQAGTISANGEREIGELIAKAMEKVGKEGVIT 207
Query: 228 LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITI 287
+ +G + N L VVEGM+ DRGYISPYFVT+ + E ++ +L+ DKK++N ++ +
Sbjct: 208 IADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLHAVVKV 267
Query: 288 LEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLT 347
LE A++ P+LIV ED+E EA TL++N+LR +K+ A+KAPGFGE + L D+A LT
Sbjct: 268 LELALKKQRPLLIVAEDVESEASGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILT 327
Query: 348 GGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEVA 407
GG VI EE+G++L+K + +LGT KV V+KD T I+ + + +R QI++ IE++
Sbjct: 328 GGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIELS 387
Query: 408 EQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXX 467
+Y+KEKL ER+AKLSGGVAV+++G +E E+ EKK RV DALNATKAA
Sbjct: 388 TSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG 447
Query: 468 CTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDN 527
LL + ++D + N +QK+G +I++ +L P+ IA NAGV G+VV K+L DN
Sbjct: 448 VALLYASKELDKL--PTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDN 505
Query: 528 FRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAA 587
GY+AA G+Y D++ AGIIDP KV+R L AASV+ T+++++V+I + EK A A
Sbjct: 506 TDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEKEAPA 565
Query: 588 GNPMGGSGF 596
MGG +
Sbjct: 566 MGGMGGMDY 574
>Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 577
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/536 (45%), Positives = 354/536 (66%), Gaps = 5/536 (0%)
Query: 44 RKCNFRVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVN 103
R R AAK++ F + A+ + GV +LAD V VT+GPKGR VV+E +G+PK+
Sbjct: 25 RLALHRNYAAKDIKFGVEARAL--MLRGVEELADAVKVTMGPKGRTVVIEQSFGAPKVTK 82
Query: 104 DGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGA 163
DGVTVAK +E + V+N+GA LV+Q A TND AGDGTT + VL + + EG K VAAG
Sbjct: 83 DGVTVAKSIEFSNRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFAEGCKSVAAGM 142
Query: 164 NPVQITRGIEKTAKALVSELQKMSKEVEDSE-LADVAAVSAGNNYEIGNMIAEAMNKVGR 222
N + + RGI +V+ L+ M++ + SE +A V +SA EIG +IA+AM KVG+
Sbjct: 143 NAMDLRRGISMAVDEVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGK 202
Query: 223 QGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNAR 282
+GV+T+ +G + N L VVEGM+ DRGYISPYF+T+ + E ++ +L+ DKK++N
Sbjct: 203 EGVITITDGNTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHDKKVSNLH 262
Query: 283 DLITILEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDD 342
++ +LE A++ P+LIV ED+E EAL TL++N+LR +K+ A+KAPGFGE + L D
Sbjct: 263 AVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGESRKANLQD 322
Query: 343 IATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKN 402
+A LTGG VI EE+G++L+ + +LGT KV V+KD T I+ + + +R Q+++
Sbjct: 323 LAILTGGEVITEELGMNLENFEPQMLGTCKKVTVSKDDTVILDGAGDKKAIEERAEQLRS 382
Query: 403 QIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXX 462
IE++ +Y+KEKL ER+AKLSGGVAV+++G +E E+ EKK RV DALNATKAA
Sbjct: 383 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGI 442
Query: 463 XXXXXCTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKV 522
LL + +D + N +QK+G +I++ +L P+ IA NAGV GSV+ K+
Sbjct: 443 VPGGGVALLYASKDLDKL--QTANFDQKIGVQIIQNALKTPVHTIASNAGVEGSVIIGKL 500
Query: 523 LANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDI 578
L DN GY+AA G+Y D++ +GIIDP KV+R L AASV+ T+++++V+I
Sbjct: 501 LEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 556
>Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 581
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/537 (44%), Positives = 346/537 (64%), Gaps = 5/537 (0%)
Query: 36 LPRKNRPQRKCNFRVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESK 95
L R +++ R AAKE+ F A L GVN LAD V VT+GPKGRNV++E
Sbjct: 23 LSRGGCGEQRLWARGYAAKEVAFGVGARA--ALLQGVNDLADAVKVTMGPKGRNVIIERS 80
Query: 96 YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEG 155
+ +PK+ DGVTVAK +E ED +N+GA LV+Q A TN +AGDGTT + VL Q ++TEG
Sbjct: 81 HRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEG 140
Query: 156 VKVVAAGANPVQITRGIEKTAKALVSELQKMSKEVEDSE-LADVAAVSAGNNYEIGNMIA 214
K VAAG N + + GI K ++ + L+ + + SE + VA +SA EIG++I+
Sbjct: 141 CKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLIS 200
Query: 215 EAMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLV 274
+AM KVG+ GV+T+ +GK+ +N L V+GM+ RGYISPYFVTD + E EN +L+
Sbjct: 201 KAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIH 260
Query: 275 DKKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGE 334
DKKI+ L+ +LE +I+ P+LI+ ED+E EAL+ LV+N+ R LKI A+KAPGFGE
Sbjct: 261 DKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGE 320
Query: 335 RKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVN 394
+ LDD+A LTGG V+ E+ GL L K + +LGTA KV V+ D T I+ G + ++
Sbjct: 321 NRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQIE 380
Query: 395 KRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNAT 454
+R Q++ ++ + ++KEK ER++KLSGGVAV+++G +E E+ EKK RV DAL+A
Sbjct: 381 ERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAA 440
Query: 455 KAAXXXXXXXXXXCTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVN 514
+AA LL ++D II N+++K+G +I++ +L PL IA NAG++
Sbjct: 441 RAAVEEGIVPGGGVALLYATKELDKIITA--NEDEKIGVQIIKNALKAPLMTIAANAGID 498
Query: 515 GSVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFITS 571
G VV K++ DN GY+AA G+Y D++ AGIIDP KV+R L+ A+SV+ T+
Sbjct: 499 GGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTT 555
>Os09g0563300 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 408
Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 250/380 (65%), Gaps = 1/380 (0%)
Query: 198 VAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVT 257
VA++SAGN+ +G++IA+A+ K+G G++ +E S ++ V EGM+ D+GYISP+F+T
Sbjct: 6 VASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPHFIT 65
Query: 258 DSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNR 317
+ +K VE+EN ++LL D+++++ ++++ +LE + P+LI+ ED+ +TLV+N+
Sbjct: 66 NQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTLVLNK 125
Query: 318 LRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVT 377
L G L +A +K PG G+ K L DIA +TG ++G L A D LG A K+ +T
Sbjct: 126 LNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKITIT 185
Query: 378 KDSTTIVGDGTTQDEVNKRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTE 437
D+TTI+ + + E+ R+ Q+K +E Y KE+ + RIAKLS G+AVI+VGA TE
Sbjct: 186 SDTTTIIAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGAATE 245
Query: 438 TELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLASKVDAIIETLENDEQKVGAEIVR 497
EL+++KLR EDA NAT AA T ++L+ + +I++ +++ E+K+G IV
Sbjct: 246 AELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVNIVG 305
Query: 498 KSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCC 557
K+L P IA+NAG +G V EK+LA++ +R GYNA T K+EDL+ AG++DP +V RC
Sbjct: 306 KALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVARCV 364
Query: 558 LEHAASVAKTFITSDAVVVD 577
L+++AS+A + + A++ D
Sbjct: 365 LQNSASIAGLILMTQAMMFD 384
>AK063576
Length = 353
Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 226/342 (66%), Gaps = 4/342 (1%)
Query: 248 RGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAI-RGGYPILIVTEDIE 306
RG+ISPYF+TD + E E +L+ D K+++ +I +L++AI + P+LI+ ED++
Sbjct: 1 RGFISPYFITDPKTQKCELEKPLILVTDSKLSSNSQIIPVLQNAISKHQRPLLIIAEDVD 60
Query: 307 QEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSLDKADRD 366
+AL TLV+NR+R K+ A+KAPGFG+ + L DIA +TG T++ E++GL L+ +
Sbjct: 61 SDALTTLVLNRIRAGAKVCAVKAPGFGDHRKNNLQDIAIVTGATLVTEDLGLKLEALESA 120
Query: 367 VLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEV-AEQEYEKEKLNERIAKLSG 425
LGTA KV V+KD T I+ G + +N+R QI+ +++ E+EKEK ER+AKLSG
Sbjct: 121 WLGTAEKVSVSKDDTLILHGGGDKQSINERCEQIREHLKIEGVSEFEKEKYQERLAKLSG 180
Query: 426 GVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLASKVDAIIETLE 485
GVAV+++G +E E+ EKK RV DALNATKAA L+ +AS A +E +
Sbjct: 181 GVAVLKIGGASEVEVGEKKDRVTDALNATKAAVEEGIVAGGGTALI-IASLKLAQLEA-K 238
Query: 486 NDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYEDLMAA 545
N +Q+ G +IVR+++ PLK IA NAGV G VV EKV+ +N + GYNAAT +Y ++ A
Sbjct: 239 NFDQRTGIDIVRRAVRKPLKTIANNAGVEGDVVVEKVIQMNNPKMGYNAATNEYVNMFEA 298
Query: 546 GIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAA 587
G+IDPTKVV+ L AASVA T++A+V D+ + E+ + A
Sbjct: 299 GVIDPTKVVKTALVDAASVASLMTTTEAIVTDLPKKEEHSHA 340
>Os03g0859600 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 185
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
Query: 42 PQRKCNFRVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKI 101
P R+ +AKE+ F++ + LQ GV KLA V VTLGP+GRNVVL+ ++GSPK+
Sbjct: 33 PARRLGVVRASAKEIAFDQGSRS--SLQAGVEKLAAAVAVTLGPRGRNVVLD-EFGSPKV 89
Query: 102 VNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAA 161
VNDGVT+A+ +EL DP+EN GA L+R+ A+KTND AGDGTTT+ VLA+ +I G+ V +
Sbjct: 90 VNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTS 149
Query: 162 GANPVQITRGIEKTAKALVSELQKMSKEVEDS 193
GANPV I +GI+KT +LV EL+K S+ V+ S
Sbjct: 150 GANPVSIKKGIDKTVHSLVEELEKKSRPVKGS 181
>Os12g0228400 Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 115
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 251 ISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILIVTEDIEQEAL 310
+SPYF+T+ + E ++ L+L+ + ++N + +LE A++ P+LIV ED+E EAL
Sbjct: 6 LSPYFITNQKNQKCELDD-PLILIHE-VSNLHAVAKVLELALKKQRPLLIVAEDLESEAL 63
Query: 311 ATLVVNRLRGALKIAAIKAPGFGE 334
TL++N+L +K+ A+KAPGFGE
Sbjct: 64 GTLIINKLCAGIKVCAVKAPGFGE 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,423,164
Number of extensions: 683936
Number of successful extensions: 1753
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1739
Number of HSP's successfully gapped: 15
Length of query: 598
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 491
Effective length of database: 11,448,903
Effective search space: 5621411373
Effective search space used: 5621411373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)