Os12g0277500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha) (Fragment).
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Os12g0277500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.35 | 0.475 | 14.6 | 0.254 | 2.46 | 1.37 | -0.00442 | -0.0986 | -0.707 | 19.4 | 25.7 | 224 | 21.7 | -- |
| 102.3 | 0.471 | 14.6 | 0.26 | 2.42 | 1.36 | -0.0203 | -- | -0.707 | 19.4 | 25.71 | 224 | 21.4 | -- |
| 102.28 | 0.471 | 14.6 | 0.257 | 2.44 | 1.35 | -- | -0.0739 | -0.698 | 19.4 | 25.8 | 224 | 21.4 | -- |
| 102.28 | 0.471 | 14.6 | 0.263 | 2.43 | 1.35 | -- | -- | -0.706 | 19.4 | 25.77 | 224 | 21.4 | -- |
| 242.53 | 0.725 | 14.4 | 0.284 | -- | 2.07 | -- | 0.835 | -0.995 | -- | 25.78 | 668 | 19.3 | -- |
| 149.1 | 0.572 | 14.6 | 0.501 | 2.56 | -- | -0.0976 | -- | -0.495 | 18.3 | -- | -- | -- | -- |
| 149.13 | 0.572 | 14.6 | 0.502 | 2.56 | -- | -- | -- | -0.495 | 18.3 | -- | -- | -- | -- |
| 149.13 | 0.569 | 14.5 | 0.502 | -- | 2.56 | -- | -- | -0.495 | -- | 12.91 | 1152 | 21.3 | -- |
| 104.01 | 0.475 | 14.6 | -- | 2.4 | 1.39 | -- | -- | -0.73 | 19.5 | 25.7 | 224 | 21.2 | -- |
| 490.29 | 1.03 | 14.5 | 0.433 | -- | -- | -- | -- | -0.551 | -- | -- | -- | -- | -- |
| 155.77 | 0.584 | 14.6 | -- | 2.56 | -- | -- | -- | -0.551 | 18.3 | -- | -- | -- | -- |
| 155.77 | 0.581 | 14.5 | -- | -- | 2.55 | -- | -- | -0.551 | -- | 4.586 | 1263 | 22.2 | -- |
| 495.24 | 1.04 | 14.5 | -- | -- | -- | -- | -- | -0.599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.99 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 4 | 102.53 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 5 | 102.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 13 | 104.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 14 | 104.52 | temperature | 25.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 17 | 104.94 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 35 | 105.72 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 43 | 106.36 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 45 | 106.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 68 | 107.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 82 | 107.79 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 106 | 108.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 143 | 109.17 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 149 | 109.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 155 | 109.40 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 13 |
| 194 | 110.35 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 223 | 110.83 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 244 | 111.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 310 | 112.07 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 312 | 112.07 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 313 | 112.07 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 386 | 112.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 418 | 113.06 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 424 | 113.17 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 436 | 113.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 471 | 113.52 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 520 | 114.00 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 529 | 114.09 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 552 | 114.34 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 566 | 114.51 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 601 | 114.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 613 | 114.86 | temperature | 25.0 | 270 | > th | dose independent | sin | 3 | NA |
| 620 | 114.92 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 748 | 115.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 779 | 116.21 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 816 | 116.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 821 | 116.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 843 | 116.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 846 | 116.59 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 847 | 116.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 862 | 116.66 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 866 | 116.68 | wind | 1.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 871 | 116.71 | radiation | 30.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 873 | 116.72 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 878 | 116.73 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 880 | 116.73 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 881 | 116.73 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 883 | 116.73 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 884 | 116.73 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 886 | 116.73 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 895 | 116.78 | temperature | 25.0 | 270 | < th | dose independent | sin | 2 | NA |
| 896 | 116.78 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 897 | 116.78 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 945 | 117.07 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 953 | 117.13 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 971 | 117.25 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 993 | 117.36 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 1 |