Os09g0563300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os09g0563300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.96 | 0.577 | 8.55 | 1.7 | 3.01 | -2.54 | 0.396 | -1.27 | 0.0229 | 16.1 | 30.75 | 90 | 19.3 | -- |
| 152.59 | 0.575 | 8.55 | 1.65 | 2.97 | -2.41 | 0.214 | -- | 0.0263 | 16 | 31.38 | 113 | 19.7 | -- |
| 151.28 | 0.573 | 8.54 | 1.7 | 2.97 | -2.59 | -- | -1.12 | 0.0242 | 16 | 31.12 | 99 | 19.6 | -- |
| 152.64 | 0.575 | 8.55 | 1.6 | 2.99 | -2.54 | -- | -- | 0.0156 | 15.9 | 31.7 | 113 | 19.8 | -- |
| 191.15 | 0.644 | 8.56 | 1.67 | -- | -3.96 | -- | -0.935 | -0.0763 | -- | 41.77 | 177 | 2.06 | -- |
| 192.78 | 0.651 | 8.53 | 1.95 | 3.18 | -- | 0.739 | -- | 0.223 | 17 | -- | -- | -- | -- |
| 194.18 | 0.653 | 8.53 | 1.95 | 3.19 | -- | -- | -- | 0.227 | 17 | -- | -- | -- | -- |
| 187.53 | 0.638 | 8.51 | 1.79 | -- | -3.64 | -- | -- | 0.0819 | -- | 58.54 | 139 | 1.9 | -- |
| 215.82 | 0.684 | 8.6 | -- | 3.02 | -3.29 | -- | -- | -0.224 | 15.7 | 31.31 | 102 | 19.3 | -- |
| 728.06 | 1.26 | 8.5 | 1.84 | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
| 294.46 | 0.803 | 8.58 | -- | 3.15 | -- | -- | -- | 0.00945 | 17 | -- | -- | -- | -- |
| 266.07 | 0.76 | 8.58 | -- | -- | -4 | -- | -- | -0.225 | -- | 43.95 | 178 | 2.08 | -- |
| 816.9 | 1.33 | 8.54 | -- | -- | -- | -- | -- | -0.0584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 14 | 147.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 15 | 147.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 16 | 147.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 18 | 148.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 34 | 149.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 56 | 150.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 70 | 151.31 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 77 | 151.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 83 | 151.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 123 | 152.59 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 133 | 152.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 141 | 153.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 168 | 153.63 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 17 |
| 180 | 153.83 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 193 | 154.13 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 10 |
| 195 | 154.15 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 269 | 155.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 280 | 155.87 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 18 |
| 336 | 156.71 | temperature | 25 | 90 | > th | dose dependent | rect. | 24 | 15 |
| 380 | 157.42 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 443 | 158.14 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 549 | 159.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 551 | 159.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 578 | 159.36 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 7 |
| 603 | 159.62 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 21 |
| 615 | 159.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 698 | 160.35 | wind | 7 | 30 | < th | dose independent | rect. | 9 | 19 |
| 712 | 160.54 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 715 | 160.55 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 744 | 160.70 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 8 |
| 765 | 160.85 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 784 | 160.99 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 938 | 162.26 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 18 |
| 973 | 162.54 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 994 | 162.67 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 19 |