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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0540300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0332) R2 : 0.824
β1 : 2.3 (0.122) R2dD : 0.145 R2D : 0.164
β2 : 2.38 (0.0876) R2dC : 0.297 R2C : 0.374
β3 : 3.31 (0.131) R2dE : 0.26 R2E : 0.398
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.297 (0.0714) R2dN8 : 0.00859 R2N8 : 0.00153
σ : 0.619
deviance : 176.38
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_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : 23.75
memory length : 30
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.64 0.608 6.3 2.32 2.49 3.24 1.99 -0.335 0.279 18 24.06 23 19.6 --
167.26 0.602 6.3 2.33 2.43 3.26 2 -- 0.279 18.1 23.85 22 19.3 --
176.71 0.619 6.28 2.36 2.45 3.22 -- 0.333 0.311 18 23.99 22 19.4 --
176.38 0.619 6.29 2.3 2.38 3.31 -- -- 0.297 18.1 23.75 30 19.1 --
248.62 0.738 6.21 2.37 -- 4.18 -- 2.11 0.37 -- 14.02 66 14.1 --
300.63 0.813 6.21 2.72 3.04 -- 2.39 -- 0.574 16.4 -- -- -- --
316.14 0.833 6.21 2.74 3.05 -- -- -- 0.587 16.4 -- -- -- --
248.15 0.734 6.22 2.32 -- 4.14 -- -- 0.372 -- 10.8 38 14 --
305.91 0.815 6.35 -- 2.33 3.8 -- -- 0.0433 18.5 22.67 64 19.4 --
816.65 1.34 6.19 2.62 -- -- -- -- 0.506 -- -- -- -- --
513.37 1.06 6.28 -- 3 -- -- -- 0.282 16.4 -- -- -- --
377.62 0.905 6.29 -- -- 4.49 -- -- 0.0613 -- 15.2 31 14.1 --
997.08 1.47 6.25 -- -- -- -- -- 0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.10 temperature 25 30 > th dose dependent sin 2 NA
9 172.99 temperature 10 10 > th dose dependent sin 0 NA
31 177.51 temperature 30 30 < th dose dependent sin 0 NA
65 189.59 temperature 25 10 > th dose dependent rect. 7 11
71 190.72 temperature 25 10 > th dose dependent rect. 7 9
74 191.01 temperature 25 10 > th dose dependent rect. 7 15
79 191.81 temperature 30 90 < th dose dependent rect. 5 14
80 192.13 temperature 30 90 < th dose dependent rect. 5 12
84 192.45 temperature 25 10 > th dose dependent rect. 4 14
106 193.29 temperature 25 10 > th dose dependent rect. 7 22
120 193.93 temperature 20 270 > th dose dependent rect. 6 9
137 194.31 temperature 30 270 < th dose dependent rect. 3 14
142 194.46 temperature 25 10 > th dose dependent rect. 4 18
154 194.63 temperature 25 30 > th dose dependent rect. 19 23
244 196.47 temperature 25 10 > th dose dependent no NA NA
335 198.11 temperature 25 10 > th dose dependent rect. 17 23
370 198.75 temperature 30 10 < th dose dependent rect. 6 12
539 203.84 temperature 25 90 > th dose independent sin 1 NA
572 205.05 temperature 25 270 > th dose independent rect. 6 8
616 206.34 temperature 25 90 < th dose independent sin 1 NA
635 206.95 temperature 25 270 > th dose independent sin 3 NA
650 207.37 temperature 25 10 > th dose dependent rect. 15 23
673 207.93 temperature 25 10 > th dose dependent rect. 13 23
685 208.16 temperature 25 270 < th dose independent rect. 2 15
732 208.76 temperature 25 90 < th dose independent rect. 5 14
756 208.99 temperature 25 90 > th dose independent rect. 7 11
792 209.50 temperature 25 270 < th dose independent sin 3 NA