BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0540300 Os05g0540300|AK070127
(581 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial p... 1056 0.0
Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (jap... 748 0.0
AK109517 744 0.0
Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza ... 737 0.0
Os02g0102900 Similar to RuBisCO subunit binding-protein bet... 459 e-129
Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (... 452 e-127
Os12g0277500 Similar to RuBisCO subunit binding-protein alp... 428 e-120
AK108892 422 e-118
AK063576 370 e-102
AK068562 281 1e-75
Os09g0563300 Similar to RuBisCO subunit binding-protein alp... 267 1e-71
Os03g0859600 Similar to RuBisCO subunit binding-protein alp... 122 8e-28
Os12g0228400 Similar to mitochondrial chaperonin-60 [Oryza ... 112 6e-25
>Os05g0540300 Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 581
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/563 (94%), Positives = 532/563 (94%)
Query: 19 LRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIE 78
LRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIE
Sbjct: 19 LRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIE 78
Query: 79 RSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILT 138
RSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILT
Sbjct: 79 RSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILT 138
Query: 139 EGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDL 198
EGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDL
Sbjct: 139 EGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDL 198
Query: 199 ISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLIL 258
ISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLIL
Sbjct: 199 ISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLIL 258
Query: 259 IHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGF 318
IHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGF
Sbjct: 259 IHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGF 318
Query: 319 GENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQ 378
GENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVS KQQ
Sbjct: 319 GENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQ 378
Query: 379 IEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALH 438
IEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALH
Sbjct: 379 IEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALH 438
Query: 439 AARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGID 498
AARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGID
Sbjct: 439 AARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGID 498
Query: 499 GGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLXXXXXXX 558
GGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLL
Sbjct: 499 GGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTTEAA 558
Query: 559 XXXXXXXXXXXXSRMPQMSGMDF 581
SRMPQMSGMDF
Sbjct: 559 VAEPPAAKARMASRMPQMSGMDF 581
>Os10g0462900 mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 574
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/523 (70%), Positives = 450/523 (86%)
Query: 29 GEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTK 88
G + +R YAAK++ FGV ARA +L+GV +LADAVKVTMGPKGRNV+IE+S+ +PKVTK
Sbjct: 23 GSRLALSRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTK 82
Query: 89 DGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGV 148
DGVTVAKSIEF+D KNVGA+LVKQVA ATN AGDGTTCATVLT+AI TEGCK+VAAG+
Sbjct: 83 DGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGM 142
Query: 149 NVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGK 208
N MDLR GI+ A+ ++ T+LK A +I++SEEI QV TISANGE+EIG+LI+KAMEKVGK
Sbjct: 143 NAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGK 202
Query: 209 DGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMN 268
+GVITI DG TL NELE V+GMKL RGYISPYFVT+ KTQKCE+++PLILIHDKK+S ++
Sbjct: 203 EGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLH 262
Query: 269 SLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDD 328
+++ VLE+++K +RPLLI+AEDVE EAL L++NK RAG+K+CAVKAPGFGENR+ANL D
Sbjct: 263 AVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQD 322
Query: 329 VAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRE 388
+A+LTGGEV++E+ G++L K E QMLGT KKVTVS K+ IEER +Q+R
Sbjct: 323 LAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRS 382
Query: 389 SMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGI 448
+++ ST+ +DKEK QERL+KLSGGVAVLKIGGASE EVGEKKDRVTDAL+A +AAVEEGI
Sbjct: 383 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGI 442
Query: 449 VPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIE 508
VPGGGVALLYA+KELDK+ TAN D+KIGVQII+NALK P+ TIA+NAG++G VV+GKL+E
Sbjct: 443 VPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLE 502
Query: 509 QDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLL 551
QDN ++GYDAA+GEYVDM+KAGIIDP+KVIRTAL DA+SVS L
Sbjct: 503 QDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSL 545
>AK109517
Length = 574
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/523 (69%), Positives = 448/523 (85%)
Query: 29 GEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTK 88
G + +R YAAK++ FGV ARA +L+GV +LADAVKVTMGPKGRNV+IE+S+ +PKVTK
Sbjct: 23 GSRLALSRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTK 82
Query: 89 DGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGV 148
DGVTVAKSIEF+D KNVGA+LVKQVA ATN AGDGTTCATVLT+AI TEGCK+VAAG+
Sbjct: 83 DGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGM 142
Query: 149 NVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGK 208
N MDLR GI+ A+ ++ T+LK A +I++SEEI Q TISANGE+EIG+LI+KAMEKVGK
Sbjct: 143 NAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQAGTISANGEREIGELIAKAMEKVGK 202
Query: 209 DGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMN 268
+GVITI DG TL NELE V+GMKL RGYISPYFVT+ KTQKCE+++PLILIHDKK+S ++
Sbjct: 203 EGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLH 262
Query: 269 SLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDD 328
+++ VLE+++K +RPLLI+AEDVE EA L++NK RAG+K+CAVKAPGFGENR+ANL D
Sbjct: 263 AVVKVLELALKKQRPLLIVAEDVESEASGTLIINKLRAGIKVCAVKAPGFGENRKANLQD 322
Query: 329 VAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRE 388
+A+LTGGEV++E+ G++L K E QMLGT KKVTVS K+ IEER +Q+R
Sbjct: 323 LAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRS 382
Query: 389 SMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGI 448
+++ ST+ +DKEK QERL+KLSGGVAVLKIGGASE EVGEKKDRVTDAL+A +AAVEEGI
Sbjct: 383 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGI 442
Query: 449 VPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIE 508
VPGGGVALLYA+KELDK+ TAN D+KIGVQII+NALK P+ TIA+NAG++G VV+GKL+E
Sbjct: 443 VPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLE 502
Query: 509 QDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLL 551
QDN ++GYDAA+GEYVDM+KAGIIDP+KVIRTAL DA+SVS L
Sbjct: 503 QDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSL 545
>Os03g0143400 Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 577
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/523 (69%), Positives = 444/523 (84%)
Query: 29 GEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTK 88
G + R YAAK++ FGV ARA +L+GV +LADAVKVTMGPKGR V+IE+S APKVTK
Sbjct: 23 GSRLALHRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRTVVIEQSFGAPKVTK 82
Query: 89 DGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGV 148
DGVTVAKSIEF + KNVGA+LVKQVA ATN AGDGTTCATVLT+AI EGCK+VAAG+
Sbjct: 83 DGVTVAKSIEFSNRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFAEGCKSVAAGM 142
Query: 149 NVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGK 208
N MDLR GI+ A+ + T+LK A +I++SEEI QV TISANGE+EIG+LI+KAMEKVGK
Sbjct: 143 NAMDLRRGISMAVDEVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGK 202
Query: 209 DGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMN 268
+GVITITDG TL NELE V+GMKL RGYISPYF+T+QK QKCE+++PLILIHDKK+S ++
Sbjct: 203 EGVITITDGNTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHDKKVSNLH 262
Query: 269 SLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDD 328
+++ VLE+++K +RPLLI+AEDVE EAL L++NK RAG+K+CAVKAPGFGE+R+ANL D
Sbjct: 263 AVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGESRKANLQD 322
Query: 329 VAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRE 388
+A+LTGGEV++E+ G++L E QMLGT KKVTVS K+ IEER +QLR
Sbjct: 323 LAILTGGEVITEELGMNLENFEPQMLGTCKKVTVSKDDTVILDGAGDKKAIEERAEQLRS 382
Query: 389 SMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGI 448
+++ ST+ +DKEK QERL+KLSGGVAVLKIGGASE EVGEKKDRVTDAL+A +AAVEEGI
Sbjct: 383 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGI 442
Query: 449 VPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIE 508
VPGGGVALLYA+K+LDK+ TAN D+KIGVQII+NALK P+ TIA+NAG++G V+IGKL+E
Sbjct: 443 VPGGGVALLYASKDLDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGSVIIGKLLE 502
Query: 509 QDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLL 551
QDN ++GYDAA+GEYVDM+K+GIIDP+KVIRTAL DA+SVS L
Sbjct: 503 QDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSL 545
>Os02g0102900 Similar to RuBisCO subunit binding-protein beta subunit,
chloroplast (60 kDa chaperonin beta subunit) (CPN-60
beta) (Fragment)
Length = 598
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/531 (45%), Positives = 348/531 (65%), Gaps = 5/531 (0%)
Query: 23 LSRGGCGEQRLWARGYAAKEVAFGVGARA--ALLQGVNDLADAVKVTMGPKGRNVIIERS 80
L R +++ R AAKE+ F A L GVN LAD V VT+GPKGRNV++E
Sbjct: 36 LPRKNRPQRKCNFRVNAAKELYFNKDGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESK 95
Query: 81 HRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEG 140
+ +PK+ DGVTVAK +E ED +N+GA LV+Q A TN +AGDGTT + VL Q ++TEG
Sbjct: 96 YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEG 155
Query: 141 CKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLIS 200
K VAAG N + + GI K ++ + L+ + + SE + VA +SA EIG++I+
Sbjct: 156 VKVVAAGANPVQITRGIEKTAKALVSELQKMSKEVEDSE-LADVAAVSAGNNYEIGNMIA 214
Query: 201 KAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIH 260
+AM KVG+ GV+T+ +GK+ +N L V+GM+ RGYISPYFVTD + E EN +L+
Sbjct: 215 EAMNKVGRQGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLV 274
Query: 261 DKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGE 320
DKKI+ L+ +LE +I+ P+LI+ ED+E EAL+ LV+N+ R LKI A+KAPGFGE
Sbjct: 275 DKKINNARDLITILEDAIRGGYPILIVTEDIEQEALATLVVNRLRGALKIAAIKAPGFGE 334
Query: 321 NRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIE 380
+ LDD+A LTGG V+ E+ GL L K + +LGTA KV V+ + ++
Sbjct: 335 RKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVN 394
Query: 381 ERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAA 440
+R Q++ ++ + ++KEK ER++KLSGGVAV+++G +E E+ EKK RV DAL+A
Sbjct: 395 KRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNAT 454
Query: 441 RAAVEEGIVPGGGVALLYATKELDKIITA--NEDEKIGVQIIKNALKAPLMTIAANAGID 498
+AAVEEGIV GGG LL ++D II N+++K+G +I++ +L PL IA NAG++
Sbjct: 455 KAAVEEGIVVGGGCTLLRLASKVDAIIETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVN 514
Query: 499 GGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVS 549
G VV K++ DN GY+AA G+Y D++ AGIIDP KV+R L+ A+SV+
Sbjct: 515 GSVVTEKVLANDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVA 565
>Os06g0114000 Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63
kDa stress protein) (GSP63)
Length = 601
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/524 (45%), Positives = 344/524 (65%), Gaps = 5/524 (0%)
Query: 30 EQRLWARGYAAKEVAFGVGARA--ALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVT 87
+++ R AAKE+ F A L GVN LAD V VT+GPKGRNV++E + +P++
Sbjct: 47 QRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIV 106
Query: 88 KDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAG 147
DGVTVA+ +E ED +N+GA LV+Q A TN +AGDGTT + VL Q ++ EG K VAAG
Sbjct: 107 NDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAG 166
Query: 148 VNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVG 207
N + + GI K ++ LK + + SE + VA +SA EIG++I++AM KVG
Sbjct: 167 ANPVQITRGIEKTAKALVEELKKLSKEVEDSE-LADVAAVSAGNNYEIGNMIAEAMSKVG 225
Query: 208 KDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTM 267
+ GV+T+ +G++ +N L V+GM+ RGYISPYFVTD + E EN +L+ DKKI+
Sbjct: 226 RKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNA 285
Query: 268 NSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLD 327
L+ VLE +I+ P+LIIAED+E EAL+ LV+NK R LKI A+KAPGFGE + LD
Sbjct: 286 RDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLD 345
Query: 328 DVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLR 387
D+A+LTG V+ ++ GL L K + +LGTA KV ++ ++++ +R Q++
Sbjct: 346 DIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIK 405
Query: 388 ESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEG 447
++ + ++KEK ER++KL+GGVAV+++G +E E+ EKK RV DAL+A +AAVEEG
Sbjct: 406 NLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 465
Query: 448 IVPGGGVALLYATKELDKII--TANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGK 505
IV GGG LL +D I N+++K+G +I++ AL PL IA NAG++G VV K
Sbjct: 466 IVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEK 525
Query: 506 LIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVS 549
++ DN GY+AA G+Y D++ AGIIDP KV+R L+ A+SV+
Sbjct: 526 VLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVA 569
>Os12g0277500 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 578
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/521 (43%), Positives = 346/521 (66%), Gaps = 5/521 (0%)
Query: 31 QRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDG 90
QRL R AK++AF +RAAL GV LA+AV VT+GP+GRNV+++ + +PKV DG
Sbjct: 31 QRLVVRA-DAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDE-YGSPKVVNDG 88
Query: 91 VTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNV 150
VT+A++IE D +N GA L+++VA TN AGDGTT A+VL + I+ G +V +G N
Sbjct: 89 VTIARAIELYDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANP 148
Query: 151 MDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDG 210
+ L+ GI+K + + L+ KA + S +I VA+ISA ++ IG +I+ A++KVG DG
Sbjct: 149 VSLKKGIDKTVHGLIEELEKKARPVKGSGDIKAVASISAGNDELIGSMIADAIDKVGPDG 208
Query: 211 VITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSL 270
V++I + + ++ +GM++ RGYISP FVT+ + E EN +LI D+KI+++ +
Sbjct: 209 VLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEKSIVEFENAKVLITDQKITSIKEI 268
Query: 271 LPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVA 330
LP+LE + + R PL IIAED+ GEAL+ LV+NK R L + A+KAP FGE R+A L D+A
Sbjct: 269 LPILEKTTQLRAPLFIIAEDITGEALATLVVNKLRGILNVAAIKAPSFGERRKAVLQDIA 328
Query: 331 VLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRESM 390
++TG E +++D GL + + LGTA+KVT+ K +I+ R QL++ +
Sbjct: 329 IVTGAEFLAKDLGLLVENATEEQLGTARKVTIHQTTTTLIADAASKDEIQARVAQLKKEL 388
Query: 391 DKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGIVP 450
++ +++D EK ER++KLSGGVAV+K+G A+E E+ +++ R+ DA +A AA+EEGIVP
Sbjct: 389 SETDSIYDTEKLAERIAKLSGGVAVIKVGAATETELEDRQLRIEDAKNATFAAIEEGIVP 448
Query: 451 GGGVALLYATKELDKI--ITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIE 508
GGG A ++ + + I + DE++G II+ AL AP IA NAG++G VV+ K I+
Sbjct: 449 GGGTAYVHLSTTVPAIKETIEDHDERLGADIIQKALVAPASLIAHNAGVEGEVVVEK-IK 507
Query: 509 QDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVS 549
+GY+A +Y ++I+AG+IDP KV R ALQ+A+SV+
Sbjct: 508 DGEWEVGYNAMNDKYENLIEAGVIDPAKVTRCALQNAASVA 548
>AK108892
Length = 573
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/515 (45%), Positives = 343/515 (66%), Gaps = 4/515 (0%)
Query: 39 AAKEVAFGVGARA--ALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKS 96
AAK++ F A + G + LA V VT+GPKGRNV++E + +PK+ DGVT+A+
Sbjct: 29 AAKDLHFNKNMEALKKMQAGADKLATVVGVTLGPKGRNVVLESKYGSPKIVNDGVTIARE 88
Query: 97 IEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNG 156
+E ED +N+GA LV+Q A TN AGDGTT AT+L+ A + EG K VAAG N + L G
Sbjct: 89 VELEDPVENIGAKLVRQAAARTNDTAGDGTTTATILSAAFIAEGLKIVAAGTNPVQLTRG 148
Query: 157 INKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITD 216
++K ++++ L + + S ++ VA++SA G EIG LI+ AM KVG+ GV+T+ +
Sbjct: 149 MDKTVAALVKELAGLSTEVASDRDLANVASVSAGGNAEIGQLIADAMAKVGRQGVVTMEE 208
Query: 217 GKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEM 276
KT ++ L V+GM+ RGY SPYFVTD + E EN +L+ DKKIST ++ +LE
Sbjct: 209 SKTAEDNLVFVEGMQFDRGYYSPYFVTDPERMVAEYENCRVLLVDKKISTARDVIGLLEA 268
Query: 277 SIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGE 336
+I+ PLLI+AEDVE EAL+ LV+NK R LK+ AVKAPGFGE + + L+D+A+LTGG
Sbjct: 269 AIRGNYPLLIMAEDVEQEALATLVVNKLRGTLKVVAVKAPGFGERKTSYLEDIAILTGGT 328
Query: 337 VVSEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRESMDKSTAV 396
+V ++ G+ L K + +LG A KV +S + ++ R +Q+R +++
Sbjct: 329 LVKDELGVTLDKADESVLGVAAKVVISKEACTIVGDGRSQADVDTRVKQIRNLAEQTEQE 388
Query: 397 FDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVAL 456
++KEK ER+++LSGGVA++++G +E E+ EKK RV DAL+A +AAVEEGIV GGG L
Sbjct: 389 YEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTL 448
Query: 457 LYATKELDKI--ITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNM 514
L ++D + +NE++K+G +I+K AL PL IA NAG +G VV+ K+I+ + N
Sbjct: 449 LKLAAKVDTVKESLSNEEQKVGAEIVKKALTYPLKLIAENAGTNGSVVMQKVIDSQDPNY 508
Query: 515 GYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVS 549
GY+AA ++ D++++GIIDP KVIR AL++A SV+
Sbjct: 509 GYNAAIDKFEDLMQSGIIDPTKVIRCALENACSVA 543
>AK063576
Length = 353
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/320 (57%), Positives = 249/320 (77%), Gaps = 2/320 (0%)
Query: 234 RGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSI-KNRRPLLIIAEDVE 292
RG+ISPYF+TD KTQKCE+E PLIL+ D K+S+ + ++PVL+ +I K++RPLLIIAEDV+
Sbjct: 1 RGFISPYFITDPKTQKCELEKPLILVTDSKLSSNSQIIPVLQNAISKHQRPLLIIAEDVD 60
Query: 293 GEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQ 352
+AL+ LVLN+ RAG K+CAVKAPGFG++R+ NL D+A++TG +V+ED GL L +E
Sbjct: 61 SDALTTLVLNRIRAGAKVCAVKAPGFGDHRKNNLQDIAIVTGATLVTEDLGLKLEALESA 120
Query: 353 MLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRESMD-KSTAVFDKEKAQERLSKLSG 411
LGTA+KV+VS KQ I ERC+Q+RE + + + F+KEK QERL+KLSG
Sbjct: 121 WLGTAEKVSVSKDDTLILHGGGDKQSINERCEQIREHLKIEGVSEFEKEKYQERLAKLSG 180
Query: 412 GVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANE 471
GVAVLKIGGASEVEVGEKKDRVTDAL+A +AAVEEGIV GGG AL+ A+ +L ++ N
Sbjct: 181 GVAVLKIGGASEVEVGEKKDRVTDALNATKAAVEEGIVAGGGTALIIASLKLAQLEAKNF 240
Query: 472 DEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGI 531
D++ G+ I++ A++ PL TIA NAG++G VV+ K+I+ +N MGY+AA EYV+M +AG+
Sbjct: 241 DQRTGIDIVRRAVRKPLKTIANNAGVEGDVVVEKVIQMNNPKMGYNAATNEYVNMFEAGV 300
Query: 532 IDPVKVIRTALQDASSVSLL 551
IDP KV++TAL DA+SV+ L
Sbjct: 301 IDPTKVVKTALVDAASVASL 320
>AK068562
Length = 420
Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/388 (38%), Positives = 238/388 (61%), Gaps = 3/388 (0%)
Query: 41 KEVAFG--VGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIE 98
K++ F + A L GV+ +A V VT+GPKGRNV++ + PK+ DG TV K IE
Sbjct: 34 KDLHFNRDLSATKKLQAGVDLVARLVGVTLGPKGRNVVLSNKYGPPKIVNDGETVLKEIE 93
Query: 99 FEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGIN 158
ED +N+G LV+Q TN VAGDG T + +L Q ++ EG K +AAG+N + + GI
Sbjct: 94 LEDPLENLGVKLVRQAGARTNDVAGDGCTTSIILAQGLIAEGMKVLAAGINPVQIARGIE 153
Query: 159 KAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITDGK 218
K S++ + L+ + I EI VA +SA + +G++IS A ++VG+ G++ I +G+
Sbjct: 154 KTASALVSELRLMSREIED-HEIAHVAAVSAGDDYAVGNMISDAFKRVGRKGMVRIENGR 212
Query: 219 TLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSI 278
+N LE V+GM+ RGY+SPYFVTD E + IL+ DKKI+ + ++ +L+ ++
Sbjct: 213 GTENGLEIVEGMQFERGYLSPYFVTDCTNMSAEFTDCKILLVDKKITDASEIIRILDSAV 272
Query: 279 KNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVV 338
K PLLI+AEDVE +A++ L+ NK + +K+ A+KAP FGE LDD+A++TGG +V
Sbjct: 273 KEDYPLLIVAEDVEEKAMADLIKNKLKGTIKVAAIKAPSFGEQMTQCLDDIAIMTGGTLV 332
Query: 339 SEDQGLDLGKVELQMLGTAKKVTVSXXXXXXXXXXXXKQQIEERCQQLRESMDKSTAVFD 398
ED G L K ++LG+A KV V + IE+R Q++ ++ S+ +
Sbjct: 333 REDMGYTLEKAGKEVLGSASKVVVGKDSTLIVTDGSTQHVIEKRVAQIKGQIENSSERYQ 392
Query: 399 KEKAQERLSKLSGGVAVLKIGGASEVEV 426
K+ ER+++L GG+A++++G + +E+
Sbjct: 393 KKILGERIARLCGGIAIIQVGAQTIIEM 420
>Os09g0563300 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 408
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 232/371 (62%), Gaps = 3/371 (0%)
Query: 181 INQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPY 240
+ VA+ISA ++ +GDLI+ A+EK+G DG+I I ++ +E +GMK+ +GYISP+
Sbjct: 3 FSAVASISAGNDEYVGDLIADALEKIGPDGIIKIESSSSIYTSVEVQEGMKIDKGYISPH 62
Query: 241 FVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLV 300
F+T+Q E EN +L+ D+++ + +LP+LE + + PLLIIAEDV S LV
Sbjct: 63 FITNQDKAIVEFENARVLLTDQRVDDVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTLV 122
Query: 301 LNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKV 360
LNK L + VK PG G+ ++A L D+A++TG + + D G L LG A+K+
Sbjct: 123 LNKLNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWCLQGATSDQLGMAQKI 182
Query: 361 TVSXXXXXXXXXXXXKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGG 420
T++ + +IE R QQL++ ++++T+ + KE+ R++KLS G+AV+K+G
Sbjct: 183 TITSDTTTIIAHPSMRPEIEARIQQLKKDLEETTSAYLKERFSSRIAKLSRGIAVIKVGA 242
Query: 421 ASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANED--EKIGVQ 478
A+E E+ ++K R DA +A AA+ EGI PGGGV + +K + I+ +D EKIGV
Sbjct: 243 ATEAELEDRKLRAEDAKNATFAAISEGITPGGGVTYVQLSKYIPSIMDLVDDSEEKIGVN 302
Query: 479 IIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVI 538
I+ AL P MTIA NAG DG V+ KL+ + +GY+A ++ D++ AG++DP +V
Sbjct: 303 IVGKALLVPAMTIARNAGADGPAVVEKLLASE-WRVGYNAMTDKFEDLVDAGVVDPCRVA 361
Query: 539 RTALQDASSVS 549
R LQ+++S++
Sbjct: 362 RCVLQNSASIA 372
>Os03g0859600 Similar to RuBisCO subunit binding-protein alpha subunit,
chloroplast precursor (60 kDa chaperonin alpha subunit)
(CPN-60 alpha) (Fragment)
Length = 185
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 31 QRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDG 90
+RL +AKE+AF G+R++L GV LA AV VT+GP+GRNV+++ +PKV DG
Sbjct: 35 RRLGVVRASAKEIAFDQGSRSSLQAGVEKLAAAVAVTLGPRGRNVVLDE-FGSPKVVNDG 93
Query: 91 VTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNV 150
VT+A++IE D +N GA L+++VA TN AGDGTT A+VL + I+ G +V +G N
Sbjct: 94 VTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANP 153
Query: 151 MDLRNGINKAISSITTHLKSKAWIINSSEEI 181
+ ++ GI+K + S+ L+ K+ + S +I
Sbjct: 154 VSIKKGIDKTVHSLVEELEKKSRPVKGSGDI 184
>Os12g0228400 Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica
cultivar-group)]
Length = 115
Score = 112 bits (281), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 72/84 (85%), Gaps = 2/84 (2%)
Query: 237 ISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEAL 296
+SPYF+T+QK QKCE+++PLILIH+ +S ++++ VLE+++K +RPLLI+AED+E EAL
Sbjct: 6 LSPYFITNQKNQKCELDDPLILIHE--VSNLHAVAKVLELALKKQRPLLIVAEDLESEAL 63
Query: 297 SMLVLNKHRAGLKICAVKAPGFGE 320
L++NK AG+K+CAVKAPGFGE
Sbjct: 64 GTLIINKLCAGIKVCAVKAPGFGE 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,962,245
Number of extensions: 615501
Number of successful extensions: 1474
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 13
Length of query: 581
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 475
Effective length of database: 11,501,117
Effective search space: 5463030575
Effective search space used: 5463030575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)