BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0539500 Os09g0539500|J065054J04
(79 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0539500 SKP1 component family protein 146 4e-36
Os11g0456300 Similar to Fimbriata-associated protein (Fragm... 100 2e-22
Os07g0144900 82 1e-16
Os07g0624900 80 4e-16
Os07g0145300 76 4e-15
Os07g0144800 74 3e-14
Os09g0273800 Similar to Fimbriata-associated protein (Fragm... 72 8e-14
Os10g0438100 Similar to Fimbriata-associated protein (Fragm... 72 8e-14
Os08g0375700 SKP1 component family protein 72 1e-13
Os08g0375500 71 2e-13
Os09g0274700 70 4e-13
Os09g0274800 67 2e-12
Os09g0274432 67 3e-12
>Os09g0539500 SKP1 component family protein
Length = 79
Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 70/79 (88%)
Query: 1 MYIVFYHSCTKSIRFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 60
MYIVFYHSCTKSIRFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN
Sbjct: 1 MYIVFYHSCTKSIRFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 60
Query: 61 DFTPXXXXXXXXXNQWAFE 79
DFTP NQWAFE
Sbjct: 61 DFTPEEEEEVRRENQWAFE 79
>Os11g0456300 Similar to Fimbriata-associated protein (Fragment)
Length = 173
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 48/57 (84%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP NQWAFE
Sbjct: 117 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173
>Os07g0144900
Length = 172
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AAN+LNIK LLD+TCQ VADM+ GKTPE++R+TF+I+NDFTP N WAF+
Sbjct: 115 AANFLNIKSLLDMTCQRVADMMSGKTPEQMRETFSIENDFTPEEEAAIRQENAWAFD 171
>Os07g0624900
Length = 200
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 41/60 (68%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
V AANYL+I GLLDLTC+ VAD IKGKTPEEIRK FNI ND + N WAFE
Sbjct: 140 VIAAANYLDIDGLLDLTCKRVADTIKGKTPEEIRKEFNIVNDLSKEEEEEIRRENPWAFE 199
>Os07g0145300
Length = 164
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
A+N++NIK LLDL CQ A++IKGK+PE+IRK F IKNDFTP N WAFE
Sbjct: 108 ASNFMNIKSLLDLCCQHTANLIKGKSPEQIRKEFGIKNDFTPEEEEEIRKENTWAFE 164
>Os07g0144800
Length = 157
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 14 RFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXX 73
+ M + A+N+LNIK LLDL CQ A++IKGK+PE+IRK F IKNDFTP
Sbjct: 93 KNMLYGLLLASNFLNIKSLLDLCCQHTANLIKGKSPEQIRKEFGIKNDFTP-EEEEIRKE 151
Query: 74 NQWAFE 79
N WAFE
Sbjct: 152 NTWAFE 157
>Os09g0273800 Similar to Fimbriata-associated protein (Fragment)
Length = 167
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 39/57 (68%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLN+ LLDL CQ AD+IKGKT +EIR TF I NDFTP N+WAFE
Sbjct: 110 AANYLNVPSLLDLACQHTADLIKGKTVQEIRDTFGIVNDFTPEEEEEIRKENEWAFE 166
>Os10g0438100 Similar to Fimbriata-associated protein (Fragment)
Length = 220
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 38/60 (63%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
+ AANYLNI+ LLD C VAD ++GK PEEIR F I+ND+TP N WAFE
Sbjct: 160 IIMAANYLNIEELLDDACTAVADKMRGKKPEEIRDIFEIENDYTPEQEAEVRRENAWAFE 219
>Os08g0375700 SKP1 component family protein
Length = 169
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 14 RFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXX 73
R M + AAN+LN + LLDLTCQ AD+IK + EE+R+ FNI NDFTP
Sbjct: 103 RTMVFELILAANFLNAQDLLDLTCQHAADLIKDMSVEEVREVFNITNDFTPEEEAEVRKE 162
Query: 74 NQWAFE 79
N WAF+
Sbjct: 163 NAWAFD 168
>Os08g0375500
Length = 169
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 14 RFMCMFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXX 73
R M + AAN+LN + LLDLTCQ AD+IK + EE+R+ FNI NDFTP
Sbjct: 103 RTMLFELILAANFLNAQDLLDLTCQHAADLIKDMSVEEVREVFNITNDFTPEEEAEVRKE 162
Query: 74 NQWAFE 79
N WAF+
Sbjct: 163 NAWAFD 168
>Os09g0274700
Length = 165
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 38/57 (66%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLN+ LLDL CQ AD+IKGKT +EIR F I NDFTP N+WAFE
Sbjct: 108 AANYLNVPSLLDLACQHTADLIKGKTVQEIRDMFGIVNDFTPEEEEEIRKENEWAFE 164
>Os09g0274800
Length = 172
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
+ AAN+LN+ LL+LTCQ AD+IK PE++R+ F I+NDFTP N WA+E
Sbjct: 112 LINAANFLNMPCLLELTCQRAADLIKDMMPEQVREVFGIENDFTPEEEAEVRNENAWAYE 171
>Os09g0274432
Length = 167
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
+ AAN+LN+ LL+LTCQ AD+IK PE++R+ F I+NDFTP N WA+E
Sbjct: 107 LINAANFLNMPCLLELTCQRTADLIKDMMPEQVREVFGIENDFTPEEEAEVRNENAWAYE 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,012,332
Number of extensions: 51272
Number of successful extensions: 182
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 13
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)