Os09g0539500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SKP1 component family protein.
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Os09g0539500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SKP1 component family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.54 | 0.218 | 11.6 | -0.199 | 0.0431 | -0.498 | 0.597 | -0.527 | 0.164 | 7.43 | 17.74 | 290 | -- | -- |
| 21.81 | 0.217 | 11.6 | -0.189 | 0.0399 | -0.47 | 0.683 | -- | 0.166 | 6.33 | 16.61 | 291 | -- | -- |
| 22.5 | 0.221 | 11.6 | -0.186 | 0.0358 | -0.497 | -- | -0.527 | 0.169 | 8.1 | 17.07 | 298 | -- | -- |
| 22.84 | 0.223 | 11.6 | -0.169 | 0.0612 | -0.501 | -- | -- | 0.171 | 11.6 | 10.52 | 296 | -- | -- |
| 22.56 | 0.221 | 11.6 | -0.184 | -- | -0.515 | -- | -0.554 | 0.166 | -- | 17.5 | 308 | -- | -- |
| 26.2 | 0.24 | 11.6 | -0.191 | 0.22 | -- | 0.588 | -- | 0.133 | 4.69 | -- | -- | -- | -- |
| 26.93 | 0.243 | 11.6 | -0.195 | 0.227 | -- | -- | -- | 0.129 | 3.76 | -- | -- | -- | -- |
| 23 | 0.223 | 11.6 | -0.177 | -- | -0.495 | -- | -- | 0.169 | -- | 15.27 | 308 | -- | -- |
| 23.51 | 0.226 | 11.6 | -- | 0.149 | -0.581 | -- | -- | 0.201 | 13 | 3.47 | 290 | -- | -- |
| 29.78 | 0.255 | 11.6 | -0.186 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 27.93 | 0.247 | 11.6 | -- | 0.224 | -- | -- | -- | 0.151 | 3.77 | -- | -- | -- | -- |
| 23.8 | 0.227 | 11.6 | -- | -- | -0.483 | -- | -- | 0.191 | -- | 12.76 | 326 | -- | -- |
| 30.69 | 0.259 | 11.6 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 4 | 20.07 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 5 | 20.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 13 | 20.16 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 8 |
| 20 | 20.22 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 20 |
| 24 | 20.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 26 | 20.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 28 | 20.28 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 29 | 20.28 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 22 |
| 33 | 20.32 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 10 |
| 37 | 20.36 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 18 |
| 39 | 20.36 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 40 | 20.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 56 | 20.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 84 | 20.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 90 | 20.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 107 | 20.64 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 18 |
| 108 | 20.64 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 136 | 20.72 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 156 | 20.79 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 161 | 20.80 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 171 | 20.82 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 245 | 20.99 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 269 | 21.03 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 293 | 21.08 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 18 |
| 319 | 21.12 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 19 |
| 335 | 21.15 | temperature | 30 | 90 | < th | dose independent | sin | 2 | NA |
| 368 | 21.19 | radiation | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 418 | 21.26 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 8 |
| 432 | 21.27 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 433 | 21.27 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 455 | 21.30 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 19 |
| 493 | 21.33 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 522 | 21.37 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 549 | 21.40 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 17 |
| 550 | 21.40 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 571 | 21.42 | radiation | 30 | 270 | < th | dose independent | rect. | 16 | 19 |
| 658 | 21.49 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 690 | 21.52 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 21 |
| 708 | 21.53 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 18 |
| 715 | 21.53 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 10 | 9 |
| 724 | 21.54 | temperature | 30 | 90 | > th | dose independent | sin | 2 | NA |
| 780 | 21.57 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 9 |
| 808 | 21.58 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 21 |
| 814 | 21.58 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 850 | 21.60 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 870 | 21.62 | radiation | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 871 | 21.62 | radiation | 20 | 270 | > th | dose dependent | no | NA | NA |
| 873 | 21.62 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 992 | 21.62 | radiation | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |