BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0539500 Os09g0539500|J065054J04
(79 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42190.1 | chr5:16854495-16855516 REVERSE LENGTH=172 101 6e-23
AT4G34210.1 | chr4:16379003-16379461 FORWARD LENGTH=153 98 7e-22
AT1G75950.1 | chr1:28516715-28517454 FORWARD LENGTH=161 97 1e-21
AT4G34470.1 | chr4:16480022-16480480 REVERSE LENGTH=153 96 3e-21
AT2G03170.1 | chr2:961322-961771 FORWARD LENGTH=150 87 1e-18
AT3G60010.1 | chr3:22163094-22163558 REVERSE LENGTH=155 83 3e-17
AT1G20140.1 | chr1:6986430-6987079 FORWARD LENGTH=164 83 3e-17
AT2G25700.1 | chr2:10948914-10949551 REVERSE LENGTH=164 83 4e-17
AT3G21850.1 | chr3:7697089-7697550 REVERSE LENGTH=154 80 2e-16
AT3G60020.1 | chr3:22164844-22165305 REVERSE LENGTH=154 76 3e-15
AT3G25650.1 | chr3:9335876-9336459 REVERSE LENGTH=178 75 8e-15
AT2G03190.1 | chr2:964232-964744 FORWARD LENGTH=171 75 9e-15
AT3G21860.1 | chr3:7699777-7700235 REVERSE LENGTH=153 74 1e-14
AT1G10230.1 | chr1:3355600-3356151 FORWARD LENGTH=184 72 5e-14
AT2G03160.1 | chr2:959645-960247 FORWARD LENGTH=201 72 7e-14
AT3G21830.1 | chr3:7693481-7693939 REVERSE LENGTH=153 71 1e-13
AT2G20160.1 | chr2:8699672-8700124 REVERSE LENGTH=151 57 1e-09
AT3G61415.1 | chr3:22722962-22725577 REVERSE LENGTH=352 48 9e-07
>AT5G42190.1 | chr5:16854495-16855516 REVERSE LENGTH=172
Length = 171
Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 48/57 (84%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP NQWAFE
Sbjct: 115 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>AT4G34210.1 | chr4:16379003-16379461 FORWARD LENGTH=153
Length = 152
Score = 98.2 bits (243), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 46/57 (80%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP NQWAFE
Sbjct: 96 AANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>AT1G75950.1 | chr1:28516715-28517454 FORWARD LENGTH=161
Length = 160
Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 46/57 (80%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP NQWAFE
Sbjct: 104 AANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>AT4G34470.1 | chr4:16480022-16480480 REVERSE LENGTH=153
Length = 152
Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 45/57 (78%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP NQWAFE
Sbjct: 96 AANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>AT2G03170.1 | chr2:961322-961771 FORWARD LENGTH=150
Length = 149
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 20 VFQ---AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 76
VFQ AANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP N W
Sbjct: 87 VFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAW 146
Query: 77 AFE 79
AFE
Sbjct: 147 AFE 149
>AT3G60010.1 | chr3:22163094-22163558 REVERSE LENGTH=155
Length = 154
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 41/60 (68%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
V AANYLNIK LLDL CQTVADMI GK P+EIR I+NDFTP NQWAFE
Sbjct: 95 VMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154
>AT1G20140.1 | chr1:6986430-6987079 FORWARD LENGTH=164
Length = 163
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNI GLLDLTC+ VAD ++GKTPE++R FNIKND+TP N+WAFE
Sbjct: 107 AANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163
>AT2G25700.1 | chr2:10948914-10949551 REVERSE LENGTH=164
Length = 163
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
+ +AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP N+WAFE
Sbjct: 104 LLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163
>AT3G21850.1 | chr3:7697089-7697550 REVERSE LENGTH=154
Length = 153
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
+ +AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP N+WAFE
Sbjct: 94 LIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153
>AT3G60020.1 | chr3:22164844-22165305 REVERSE LENGTH=154
Length = 153
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 11 KSIRFMCMF-VFQAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTP 64
K+I +F V AANYLNI+ LLDLTC+TV AD++ GKTP+EIR FNI+ND T
Sbjct: 79 KTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTA 138
Query: 65 XXXXXXXXXNQWAFE 79
NQWAF+
Sbjct: 139 EEVAKIREENQWAFQ 153
>AT3G25650.1 | chr3:9335876-9336459 REVERSE LENGTH=178
Length = 177
Score = 74.7 bits (182), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 11 KSIRFMCMF-VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXX 68
K+I +F + AANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDFT
Sbjct: 97 KNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEE 156
Query: 69 XXXXXNQWAFE 79
N WAFE
Sbjct: 157 AIRKENAWAFE 167
>AT2G03190.1 | chr2:964232-964744 FORWARD LENGTH=171
Length = 170
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 18 MFVFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 77
M + A NYLN++ LL LTCQTVAD +K +PEE+R+ FNI+ND+TP N WA
Sbjct: 106 MKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWA 165
Query: 78 FE 79
FE
Sbjct: 166 FE 167
>AT3G21860.1 | chr3:7699777-7700235 REVERSE LENGTH=153
Length = 152
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 38/57 (66%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLNIK LLDL CQTVADMIK T E RK FNI+ND+T NQW FE
Sbjct: 96 AANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152
>AT1G10230.1 | chr1:3355600-3356151 FORWARD LENGTH=184
Length = 183
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 38/59 (64%)
Query: 20 VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 78
+ AANYLN +GLL QTVAD IK KTPEE+R+ FNI+NDFTP N W F
Sbjct: 123 IILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 181
>AT2G03160.1 | chr2:959645-960247 FORWARD LENGTH=201
Length = 200
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AANYLN++GL DL +T+AD IK TPEE+R+ FNI+NDFTP N W FE
Sbjct: 134 AANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190
>AT3G21830.1 | chr3:7693481-7693939 REVERSE LENGTH=153
Length = 152
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 79
AAN+LN K LL L QTVADMIKG TP+++R+ FNI+ND TP N+WAFE
Sbjct: 96 AANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152
>AT2G20160.1 | chr2:8699672-8700124 REVERSE LENGTH=151
Length = 150
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 11 KSIRFMCMF-VFQAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXX 69
K+I +F + AA+YL + GL +L Q +AD KT EIR+ FNI+ND+TP
Sbjct: 81 KNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEE 140
Query: 70 XXXXNQWAF 78
N+WAF
Sbjct: 141 LRKKNEWAF 149
>AT3G61415.1 | chr3:22722962-22725577 REVERSE LENGTH=352
Length = 351
Score = 48.1 bits (113), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 23 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 63
AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct: 110 AADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,441,831
Number of extensions: 40512
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 18
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)