BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0526200 Os09g0526200|AK071877
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0526200 Similar to OCL3 protein 504 e-143
Os02g0674800 Similar to OCL1 homeobox protein 295 3e-80
Os04g0569100 Similar to OCL1 homeobox protein 258 5e-69
Os04g0627000 Similar to Roc1 235 4e-62
Os10g0575600 Homeodomain-related containing protein 150 9e-37
Os08g0292000 Homeobox domain containing protein 125 5e-29
Os01g0788800 Homeodomain-like containing protein 73 3e-13
>Os09g0526200 Similar to OCL3 protein
Length = 302
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/302 (84%), Positives = 254/302 (84%)
Query: 1 PARRREPVACHDGXXXXXXXXXXXLAPATVPVSRMLKLAQRMTDNFCAGVCASAAQKWRR 60
PARRREPVACHDG LAPATVPVSRMLKLAQRMTDNFCAGVCASAAQKWRR
Sbjct: 1 PARRREPVACHDGQRRERQRRRRRLAPATVPVSRMLKLAQRMTDNFCAGVCASAAQKWRR 60
Query: 61 LDEWRXXXXXXXXXXXXXXXXKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFD 120
LDEWR KVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFD
Sbjct: 61 LDEWRGEGGGGGGGGGGDGEDKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFD 120
Query: 121 YLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTD 180
YLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTD
Sbjct: 121 YLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTD 180
Query: 181 SSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVXXXXXXX 240
SSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEV
Sbjct: 181 SSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVGSGASPN 240
Query: 241 XXXXXXXXXXXXXXLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQASII 300
LVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQASII
Sbjct: 241 SAAGGGGGSNNTGSLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQASII 300
Query: 301 SP 302
SP
Sbjct: 301 SP 302
>Os02g0674800 Similar to OCL1 homeobox protein
Length = 804
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 187/262 (71%), Gaps = 32/262 (12%)
Query: 35 MLKLAQRMTDNFCAGVCASAAQKWRRLDEWRXXXXXXXXXXXXXXXXKVRMMARHSVGAP 94
MLKLA+RMT+NFCAGV AS+A++W +LD VR+MAR SV P
Sbjct: 572 MLKLARRMTENFCAGVSASSAREWSKLD-----------GATGSIGEDVRVMARKSVSEP 620
Query: 95 GEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGN 154
GEPPGVVLSA TSV +P P+++F++LRDEQ R +WDIL+NG MQEM IAKGQ GN
Sbjct: 621 GEPPGVVLSAATSVWVP-VAPEKLFNFLRDEQLRAEWDILSNGGPMQEMTQIAKGQRDGN 679
Query: 155 AVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSG 214
+VSLLR +A S NQ++MLILQETCTD+SGS+VVYAPVD+ +M +VMNGGDS YV+LLPSG
Sbjct: 680 SVSLLRASAVSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVALLPSG 739
Query: 215 FAILPDGHNNGASPSPAEVXXXXXXXXXXXXXXXXXXXXXLVTVAFQILVNNLPTAKLTV 274
FAILPDG GA+ L+TVAFQILVNN PTAKLTV
Sbjct: 740 FAILPDGPRIGAT--------------------GYETGGSLLTVAFQILVNNQPTAKLTV 779
Query: 275 ESVDTVSNLLSCTIQKIKSALQ 296
ESV+TV+NL+SCTI+KIK+ALQ
Sbjct: 780 ESVETVNNLISCTIKKIKTALQ 801
>Os04g0569100 Similar to OCL1 homeobox protein
Length = 806
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 176/265 (66%), Gaps = 33/265 (12%)
Query: 35 MLKLAQRMTDNFCAGVCASAAQKWRRLDEWRXXXXXXXXXXXXXXXXKVRMMARHSVGAP 94
MLKLA+RMTDNFCAGV S+ ++W +L V +MAR SV P
Sbjct: 575 MLKLARRMTDNFCAGVSTSSTREWSKL-----------VGLTGNIGEDVHVMARKSVDEP 623
Query: 95 GEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGN 154
G PPGVVLSA TSV +P +P+R+F++L ++ R +WDIL+NG MQE+ IAKGQ +GN
Sbjct: 624 GTPPGVVLSAATSVWMP-VMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGN 682
Query: 155 AVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSG 214
V LL+ + T QN+MLILQETC D+SGS+VVYAPVD+ +MH+VM+GGDS+ V+LLPSG
Sbjct: 683 TVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSG 742
Query: 215 FAILPDGHNNGASPSPAEVXXXXXXXXXXXXXXXXXXXXXLVTVAFQILVNNLPTAKLTV 274
FAILP G + GA L+TVAFQIL N+ P+AKLTV
Sbjct: 743 FAILPAGPSIGAD---------------------HKMGGSLLTVAFQILANSQPSAKLTV 781
Query: 275 ESVDTVSNLLSCTIQKIKSALQASI 299
ESV+TVSNL+SCTI+KIK+AL +
Sbjct: 782 ESVETVSNLISCTIKKIKTALHCDV 806
>Os04g0627000 Similar to Roc1
Length = 784
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/261 (51%), Positives = 172/261 (65%), Gaps = 29/261 (11%)
Query: 35 MLKLAQRMTDNFCAGVCASAAQKWRRLDEWRXXXXXXXXXXXXXXXXKVRMMARHSVGAP 94
MLKLA+RM +FC GV AS A +W L VR+M R SV P
Sbjct: 546 MLKLAERMVVSFCGGVTASVAHQWTTL--------------SGSGAEDVRVMTRKSVDDP 591
Query: 95 GEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGN 154
G PPG+VL+A TS LP P+RVFD+LRDE R +WDIL+NG +QEM HIA G+ GN
Sbjct: 592 GRPPGIVLNAATSFWLP-VPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGN 650
Query: 155 AVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSG 214
VSLLR N+++ NQ+NMLILQE+CTD+SGS V+YAPVDV +M+VV+NGGD YV+LLPSG
Sbjct: 651 CVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSG 710
Query: 215 FAILPDGHNNGASPSPAEVXXXXXXXXXXXXXXXXXXXXXLVTVAFQILVNNLPTAKLTV 274
FAILPDG PA L+TVAFQILV+++PTAKL++
Sbjct: 711 FAILPDG--------PAHD------GGDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSL 756
Query: 275 ESVDTVSNLLSCTIQKIKSAL 295
SV TV++L++CT+++IK+A+
Sbjct: 757 GSVATVNSLIACTVERIKAAV 777
>Os10g0575600 Homeodomain-related containing protein
Length = 882
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 147/289 (50%), Gaps = 44/289 (15%)
Query: 33 SRMLKLAQRMTDNFCAGVCASAAQKWRRLDEWRXXXXXXXXXXXXXXXXKVRMMARHSVG 92
+ M+KL+QRM FCA + AS Q W L + +R+ R +
Sbjct: 603 TNMMKLSQRMITTFCANISASGTQSWTALSD--------------STQDTIRVTTRKNT- 647
Query: 93 APGEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHH 152
PG+P GV+L+A ++ LP T Q+VF+ L DEQ+R +IL+NG ++ E+ HIA G H
Sbjct: 648 EPGQPSGVILTAVSTSWLPFT-HQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHP 706
Query: 153 GNAVSLLRPNATS-GNQNNMLILQETCTD-SSGSLVVYAPVDVQSMHVVMNGGDSAYVSL 210
N +SLLR NA S +QN L+LQE+ T GSLVV+A VDV ++ V M+G D +Y+ L
Sbjct: 707 RNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPL 766
Query: 211 LPSGFAILPDGHNNGASPSPAEVXXXXXXXXXXXXXXXXXXXXX---------------- 254
LP GFAI P SPSPA
Sbjct: 767 LPLGFAIFP-----ATSPSPAAAPTISSSTTTTTGNGNGETSSTPPRNSSSNNNNADELL 821
Query: 255 -----LVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQAS 298
L+TV Q+L + +P+AKL + SV +++ + I +I +AL++S
Sbjct: 822 PPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALKSS 870
>Os08g0292000 Homeobox domain containing protein
Length = 786
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 89/146 (60%), Gaps = 17/146 (11%)
Query: 92 GAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILA---------------- 135
GA GEP G++LSATT++ LPG P+ V+D+LRDEQ G+W L
Sbjct: 562 GATGEPAGLLLSATTTIWLPGVNPRHVYDHLRDEQCHGEWRCLLGEQLHQGNALPYGAPL 621
Query: 136 NGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQS 195
NGE + E + G H G+A+SL+ P GN +N L+LQE TD SGSL+VYA DV +
Sbjct: 622 NGETVPEFYRMVNGLHEGHAISLISPREMGGNISNTLLLQEARTDLSGSLIVYARTDVNT 681
Query: 196 MHVVMNGG-DSAYVSLLPSGFAILPD 220
+H +MN G + A V L+ SG AILPD
Sbjct: 682 VHSIMNSGLNPATVFLVSSGCAILPD 707
>Os01g0788800 Homeodomain-like containing protein
Length = 709
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
Query: 101 VLSATTSVRLPGTLPQR-VFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLL 159
+LS T S+RLP LP R FD LR+ R WD+L +G ++E IA+G + + V++L
Sbjct: 511 ILSVTASLRLP--LPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVL 568
Query: 160 R-PNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVM---------NGGDSAYVS 209
A ++ +ILQ D+SGS +VY+ +D + M+ ++ GG S Y
Sbjct: 569 HCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLY-- 626
Query: 210 LLPSGFAILPD 220
P+GF++LPD
Sbjct: 627 --PTGFSLLPD 635
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,024,692
Number of extensions: 335557
Number of successful extensions: 723
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 7
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)