Os09g0526200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OCL3 protein.
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Os09g0526200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OCL3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.15 | 0.249 | 11.7 | 0.61 | 0.169 | 0.805 | 0.0927 | -1.96 | 0.285 | 13.3 | 29.35 | 128 | -- | -- |
| 30.53 | 0.257 | 11.7 | 0.233 | 0.0453 | 1.16 | 0.321 | -- | 0.127 | 12.9 | 21.08 | 267 | -- | -- |
| 28.17 | 0.247 | 11.7 | 0.629 | 0.17 | 0.806 | -- | -2.07 | 0.288 | 13.5 | 29.6 | 127 | -- | -- |
| 30.9 | 0.259 | 11.7 | 0.33 | 0.0337 | 1.33 | -- | -- | 0.149 | 12 | 20.93 | 267 | -- | -- |
| 29.07 | 0.251 | 11.7 | 0.613 | -- | 0.683 | -- | -2.02 | 0.274 | -- | 28.67 | 222 | -- | -- |
| 42.28 | 0.305 | 11.8 | 0.0615 | 0.0833 | -- | -0.575 | -- | 0.0292 | 2.97 | -- | -- | -- | -- |
| 43.04 | 0.307 | 11.8 | 0.074 | 0.118 | -- | -- | -- | 0.0319 | 5.73 | -- | -- | -- | -- |
| 30.97 | 0.259 | 11.7 | 0.334 | -- | 1.34 | -- | -- | 0.146 | -- | 20.91 | 274 | -- | -- |
| 33.27 | 0.269 | 11.8 | -- | 0.0635 | 1.14 | -- | -- | 0.0873 | 7.32 | 20.97 | 267 | -- | -- |
| 43.76 | 0.309 | 11.8 | 0.0777 | -- | -- | -- | -- | 0.0347 | -- | -- | -- | -- | -- |
| 43.18 | 0.307 | 11.8 | -- | 0.119 | -- | -- | -- | 0.0236 | 5.7 | -- | -- | -- | -- |
| 33.54 | 0.27 | 11.8 | -- | -- | 1.1 | -- | -- | 0.0918 | -- | 21 | 270 | -- | -- |
| 43.92 | 0.309 | 11.8 | -- | -- | -- | -- | -- | 0.026 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 7 | 26.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 10 | 26.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 35 | 27.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 36 | 27.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 38 | 27.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 73 | 27.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 89 | 28.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 96 | 28.21 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 20 |
| 98 | 28.24 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 22 |
| 103 | 28.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 105 | 28.32 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 111 | 28.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 133 | 28.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 146 | 28.63 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 184 | 28.87 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 206 | 28.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 212 | 28.99 | temperature | 10 | 10 | > th | dose dependent | sin | 17 | NA |
| 225 | 29.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 285 | 29.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 319 | 29.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 336 | 29.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 340 | 29.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 410 | 29.56 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 446 | 29.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 502 | 29.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 631 | 29.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 638 | 29.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 651 | 30.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 662 | 30.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 670 | 30.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 680 | 30.04 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 693 | 30.05 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 694 | 30.05 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 697 | 30.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 727 | 30.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 762 | 30.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 774 | 30.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 800 | 30.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 824 | 30.17 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 827 | 30.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 884 | 30.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 966 | 30.27 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 992 | 30.29 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |