BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0500900 Os09g0500900|J100028C11
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0500900 Cytochrome b561 / ferric reductase transmembra... 302 5e-83
Os08g0524200 DOMON related domain containing protein 159 7e-40
Os03g0194900 DOMON related domain containing protein 142 1e-34
Os03g0194300 DOMON related domain containing protein 104 3e-23
Os05g0237200 DOMON related domain containing protein 83 9e-17
Os05g0556400 DOMON related domain containing protein 82 1e-16
Os01g0680900 DOMON related domain containing protein 80 6e-16
Os01g0895300 Cytochrome b561 / ferric reductase transmembra... 72 2e-13
>Os09g0500900 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 148
Score = 302 bits (774), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MFARNEGRDEITLPSHPSIHPSNRIEFSPNNIAKTFKNQSHFNFFGHEKIHGLLNAVSWG 60
MFARNEGRDEITLPSHPSIHPSNRIEFSPNNIAKTFKNQSHFNFFGHEKIHGLLNAVSWG
Sbjct: 1 MFARNEGRDEITLPSHPSIHPSNRIEFSPNNIAKTFKNQSHFNFFGHEKIHGLLNAVSWG 60
Query: 61 ILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLH 120
ILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLH
Sbjct: 61 ILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLH 120
Query: 121 RNIGIIVFALGTLQVSIKITHHNLIINI 148
RNIGIIVFALGTLQVSIKITHHNLIINI
Sbjct: 121 RNIGIIVFALGTLQVSIKITHHNLIINI 148
>Os08g0524200 DOMON related domain containing protein
Length = 390
Score = 159 bits (402), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 83/88 (94%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGIN 107
+ HG+LNAVSWG+LLPMGAI ARYLKTF+SADPAWFYLHV+CQLIGYGVGV+GWATGI+
Sbjct: 205 KNTHGILNAVSWGLLLPMGAIFARYLKTFKSADPAWFYLHVACQLIGYGVGVSGWATGIH 264
Query: 108 LGNMSNGITYTLHRNIGIIVFALGTLQV 135
LGN+S GITY+LHRNIGI VFALGTLQ+
Sbjct: 265 LGNLSKGITYSLHRNIGITVFALGTLQI 292
>Os03g0194900 DOMON related domain containing protein
Length = 384
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 85/121 (70%), Gaps = 4/121 (3%)
Query: 15 SHPSIHPSNRIEFSPNNIAKTFKNQSHFNFFGHEKIHGLLNAVSWGILLPMGAILARYLK 74
S P++ R++FS T N IHG+LNAVSWGIL+PMGA++ARYL+
Sbjct: 171 SGPNVQSMLRLDFSSGQSTGTASNSR----LHRRNIHGILNAVSWGILIPMGAMIARYLR 226
Query: 75 TFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLHRNIGIIVFALGTLQ 134
F +ADPAWFYLH++CQL GY +GVAGWA G+ LG+ S GITY+ HRNIGI +F L TLQ
Sbjct: 227 VFEAADPAWFYLHITCQLSGYILGVAGWALGLKLGSESKGITYSAHRNIGIAIFCLATLQ 286
Query: 135 V 135
V
Sbjct: 287 V 287
>Os03g0194300 DOMON related domain containing protein
Length = 417
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 17 PSIHPSNRIEFSPN---NIAKTFKNQSHFNFFGHEKIHGLLNAVSWGILLPMGAILARYL 73
P+IHP++ + + + +I T S + HG LNA+SWG LLP+GA +ARYL
Sbjct: 194 PTIHPTDASDLASHATVDILTTATEASPTASATLQWTHGSLNALSWGFLLPVGAAVARYL 253
Query: 74 KTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGITYTLHRNIGIIVFALGTL 133
+ S PAWFY H + Q GY +G AG+A G+ +G+ S G+TY LHR +GI G+L
Sbjct: 254 RPCASTGPAWFYAHAAIQATGYALGAAGFALGLVMGSASPGVTYKLHRGLGIAAATAGSL 313
Query: 134 QV 135
Q
Sbjct: 314 QT 315
>Os05g0237200 DOMON related domain containing protein
Length = 487
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGIN 107
++ HG WG+L+P+GAI ARYL R DP W+YLHV Q +GY +G AG +GI
Sbjct: 310 KRNHGAFAIFGWGVLVPLGAIAARYL---RHKDPLWYYLHVLVQFLGYIIGFAGVVSGIA 366
Query: 108 LGNMSNGITYTLHRNIGIIVFALGTLQVSIKITHHN 143
L N + +T HR++GI V ALG+LQV H N
Sbjct: 367 LYNRTYS-NFTTHRSLGISVLALGSLQVIAFFLHPN 401
>Os05g0556400 DOMON related domain containing protein
Length = 369
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 2 FARNEGRDEITLPSHPSIHPSNRIEFSPNNIAKTFKNQSHFNF------FGHEKIHGLLN 55
F+ I L SI +N++ + + TF + F +G + HG LN
Sbjct: 149 FSYRLTHQHIILAFGSSIPVNNKLTKHQDKTSFTFDFTTGKAFVDGSFPYGLRRAHGALN 208
Query: 56 AVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGINLGNMSNGI 115
+WG+L+P+GAILARY FR DP WFYLHV Q + + +G+AG G+ L N
Sbjct: 209 LFAWGVLMPIGAILARY---FRRMDPLWFYLHVGVQFVAFIIGLAGVVAGVALYNKIQA- 264
Query: 116 TYTLHRNIGIIVFALGTLQV 135
HR +GI + LG LQ+
Sbjct: 265 DIPAHRGLGIFILVLGILQI 284
>Os01g0680900 DOMON related domain containing protein
Length = 335
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 46 GHEKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATG 105
G ++ HG LN +WG+LLP+GAI+ARY + + DP WFYLH QL+G+ +G+AG G
Sbjct: 164 GLKRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGLAGIVAG 220
Query: 106 INLGNMSNGITYTLHRNIGIIVFALGTLQV 135
++L N HR +GI V LG LQ+
Sbjct: 221 VSLYNKIQA-DVPAHRGLGIFVLVLGILQI 249
>Os01g0895300 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 278
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 48 EKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATGIN 107
+K HG + + WG+L+P+G LARY F+ DP WFY H+S Q +G+ +GVAG G
Sbjct: 118 KKWHGAMAGLGWGVLMPVGIALARY---FKKHDPFWFYAHISVQGVGFVLGVAGVVAGFK 174
Query: 108 L-GNMSNGITYTLHRNIGIIVFALGTLQV 135
L ++ G T H+ IGI V LG LQV
Sbjct: 175 LNDDVPGGDT---HQAIGITVLVLGCLQV 200
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,927,052
Number of extensions: 189361
Number of successful extensions: 505
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 8
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)