BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0450600 Os09g0450600|Os09g0450600
(98 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0450600 TB2/DP1 and HVA22 related protein family protein 176 4e-45
Os11g0498600 Similar to HVA22 protein 118 9e-28
Os08g0467500 TB2/DP1 and HVA22 related protein family protein 90 4e-19
Os06g0226600 TB2/DP1 and HVA22 related protein family protein 88 1e-18
Os11g0602300 Similar to HVA22-like protein a (AtHVA22a) 88 1e-18
Os02g0747500 Similar to HVA22-like protein e (AtHVA22e) 87 2e-18
>Os09g0450600 TB2/DP1 and HVA22 related protein family protein
Length = 98
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/98 (89%), Positives = 88/98 (89%)
Query: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
Query: 61 IYDKFVREQLKKNRVKLXXXXXXXXXXADEHQSHVVRG 98
IYDKFVREQLKKNRVKL ADEHQSHVVRG
Sbjct: 61 IYDKFVREQLKKNRVKLHEHHGHGHGHADEHQSHVVRG 98
>Os11g0498600 Similar to HVA22 protein
Length = 152
Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%)
Query: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
MES SK+DDEQWL YWILYS ITL+EM L ++YWIP+WYE K+LF+AWL LP FRGA+F
Sbjct: 32 MESPSKLDDEQWLAYWILYSFITLVEMLLESLIYWIPIWYELKLLFIAWLALPNFRGAAF 91
Query: 61 IYDKFVREQLKKN 73
IY++FVREQL+K+
Sbjct: 92 IYNRFVREQLRKH 104
>Os08g0467500 TB2/DP1 and HVA22 related protein family protein
Length = 88
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 19 YSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASFIYDKFVREQLKKNRVKLX 78
+++ITL+EM VLYWIP+WY KVLFVAWLVLPQF+GASFIY K VREQL+K R +
Sbjct: 5 WAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRKYRAR-- 62
Query: 79 XXXXXXXXXADEHQSHVVRG 98
++H+ H+ +
Sbjct: 63 GGAAATVTAGEDHKVHIAKA 82
>Os06g0226600 TB2/DP1 and HVA22 related protein family protein
Length = 193
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
+E+ S VDD+QWL YW+LYS ITL E+ V+ W+P W AK+ F WLVLP F GA++
Sbjct: 35 IETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAY 94
Query: 61 IYDKFVR 67
+YD FVR
Sbjct: 95 VYDHFVR 101
>Os11g0602300 Similar to HVA22-like protein a (AtHVA22a)
Length = 314
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
+E+ S VDD+QWL YW++YSLITL E+ ++ W+P W K++F+ WLVLP F GA+F
Sbjct: 35 IETKSPVDDQQWLTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAF 94
Query: 61 IYDKFVR 67
+Y +VR
Sbjct: 95 VYQNYVR 101
>Os02g0747500 Similar to HVA22-like protein e (AtHVA22e)
Length = 192
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%)
Query: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
+E+ S VDD+QWL YW+LYS ITL E+ VL W+PLW AK+ F WLVLP F GA+
Sbjct: 37 IETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAH 96
Query: 61 IYDKFVR 67
+Y+ FVR
Sbjct: 97 VYEHFVR 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,916,743
Number of extensions: 88547
Number of successful extensions: 165
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)