Os08g0467500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TB2/DP1 and HVA22 related protein family protein.
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Os08g0467500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TB2/DP1 and HVA22 related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.16 | 0.609 | 8.45 | 0.308 | 1.95 | -2.7 | -1.32 | -2.33 | -0.194 | 10.1 | 0.67 | 1449 | -- | -- |
| 172 | 0.611 | 8.49 | 0.137 | 1.86 | -2.28 | -1.21 | -- | -0.204 | 9.85 | 0.76 | 1472 | -- | -- |
| 174.22 | 0.615 | 8.45 | 0.226 | 1.99 | -2.8 | -- | -2.37 | -0.22 | 10.1 | 0.55 | 1444 | -- | -- |
| 177.77 | 0.621 | 8.49 | 0.014 | 1.75 | -2.5 | -- | -- | -0.24 | 9.82 | 0.75 | 1489 | -- | -- |
| 267.2 | 0.765 | 8.48 | 0.423 | -- | -1.37 | -- | 1.52 | 0.0557 | -- | 0.55 | 1444 | -- | -- |
| 232.29 | 0.715 | 8.41 | 0.571 | 2.01 | -- | -1.48 | -- | 0.0731 | 10.1 | -- | -- | -- | -- |
| 240.96 | 0.727 | 8.42 | 0.513 | 2.02 | -- | -- | -- | 0.0698 | 10.1 | -- | -- | -- | -- |
| 279.78 | 0.782 | 8.47 | 0.435 | -- | -1.36 | -- | -- | 0.0564 | -- | 0.75 | 1489 | -- | -- |
| 177.77 | 0.621 | 8.49 | -- | 1.75 | -2.5 | -- | -- | -0.243 | 9.81 | 0.76 | 1489 | -- | -- |
| 488.13 | 1.03 | 8.47 | 0.486 | -- | -- | -- | -- | 0.0668 | -- | -- | -- | -- | -- |
| 247.9 | 0.737 | 8.43 | -- | 2.02 | -- | -- | -- | 0.0126 | 10.1 | -- | -- | -- | -- |
| 284.75 | 0.788 | 8.48 | -- | -- | -1.36 | -- | -- | 0.00153 | -- | 0.8207 | 1567 | -- | -- |
| 494.36 | 1.04 | 8.48 | -- | -- | -- | -- | -- | 0.0129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.10 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 2 | 162.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 3 | 162.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 24 | 163.13 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 31 | 163.31 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 44 | 163.41 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 80 | 163.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 93 | 163.98 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 104 | 164.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 110 | 164.25 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 139 | 164.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 176 | 165.69 | wind | 7 | 43200 | > th | dose independent | sin | 19 | NA |
| 183 | 165.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 186 | 165.77 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 311 | 167.42 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 312 | 167.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 352 | 167.72 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 374 | 167.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 386 | 167.97 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 406 | 168.04 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 477 | 168.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 480 | 168.50 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 488 | 168.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 497 | 168.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 534 | 168.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 565 | 168.70 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 575 | 168.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 578 | 168.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 610 | 168.84 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 686 | 169.21 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 753 | 169.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 767 | 169.64 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 780 | 169.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 907 | 170.26 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |