BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0467500 Os08g0467500|AK064041
         (88 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0467500  TB2/DP1 and HVA22 related protein family protein    150   2e-37
Os09g0450600  TB2/DP1 and HVA22 related protein family protein     85   1e-17
Os11g0498600  Similar to HVA22 protein                             80   3e-16

>Os08g0467500 TB2/DP1 and HVA22 related protein family protein
          Length = 88

 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 75/88 (85%)

Query: 1  MGKTWAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRKYX 60
          MGKTWAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRKY 
Sbjct: 1  MGKTWAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRKYR 60

Query: 61 XXXXXXXXXXXXEDHKVHIAKAEHDHGH 88
                      EDHKVHIAKAEHDHGH
Sbjct: 61 ARGGAAATVTAGEDHKVHIAKAEHDHGH 88



>Os09g0450600 TB2/DP1 and HVA22 related protein family protein
          Length = 98

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 5  WAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRK 58
          +++ITL+EM    VLYWIP+WY  KVLFVAWLVLPQF+GASFIY K VREQL+K
Sbjct: 19 YSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASFIYDKFVREQLKK 72



>Os11g0498600 Similar to HVA22 protein
          Length = 152

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 47/55 (85%)

Query: 5   WAIITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQLRKY 59
           ++ ITL+EM+ E ++YWIP+WY +K+LF+AWL LP F+GA+FIY + VREQLRK+
Sbjct: 50  YSFITLVEMLLESLIYWIPIWYELKLLFIAWLALPNFRGAAFIYNRFVREQLRKH 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,583,649
Number of extensions: 68294
Number of successful extensions: 155
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)