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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0450600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0433) R2 : 0.584
β1 : -3.53 (0.163) R2dD : 0.468 R2D : 0.351
β2 : 0.832 (0.111) R2dC : 0.0514 R2C : 0.0422
β3 : 1.66 (0.124) R2dE : 0.173 R2E : 0.0277
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.287 (0.0925) R2dN8 : 0.0114 R2N8 : 0.0346
σ : 0.809
deviance : 301.81
__
_____
C
peak time of C : 7.82
E
wheather : temperature
threshold : 26.4
memory length : 1263
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.41 0.802 5.04 -5.03 0.866 2.35 -0.726 -6.32 -0.0553 8.02 26.29 1243 -- --
301.09 0.808 4.86 -3.52 0.883 1.69 -0.503 -- 0.294 7.89 26.31 1237 -- --
292.92 0.797 5.03 -5.01 0.872 2.35 -- -6.29 -0.0276 7.9 26.42 1240 -- --
301.81 0.809 4.85 -3.53 0.832 1.66 -- -- 0.287 7.82 26.4 1263 -- --
330.75 0.847 5.05 -5 -- 2.26 -- -6.04 0.00552 -- 26.58 1308 -- --
415.19 0.955 4.84 -3 0.848 -- -0.302 -- 0.343 6.66 -- -- -- --
415.4 0.954 4.84 -3 0.848 -- -- -- 0.344 6.57 -- -- -- --
336.91 0.855 4.87 -3.51 -- 1.6 -- -- 0.308 -- 26.55 1325 -- --
603.34 1.14 4.73 -- 0.792 0.992 -- -- 0.85 7.43 28.89 1264 -- --
452.82 0.994 4.86 -2.98 -- -- -- -- 0.361 -- -- -- -- --
653.13 1.2 4.76 -- 0.811 -- -- -- 0.678 6.79 -- -- -- --
636.9 1.18 4.74 -- -- 0.998 -- -- 0.877 -- 29.2 1286 -- --
687.5 1.22 4.78 -- -- -- -- -- 0.692 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 290.89 wind 5 43200 > th dose dependent rect. 11 20
19 292.05 wind 5 43200 > th dose independent rect. 13 23
21 292.16 wind 7 43200 > th dose independent rect. 12 17
22 292.16 wind 7 43200 > th dose independent rect. 12 19
24 292.21 wind 5 43200 > th dose independent rect. 3 23
25 292.21 wind 5 43200 > th dose independent rect. 24 23
27 292.23 wind 5 43200 > th dose independent rect. 8 23
29 292.24 wind 5 43200 > th dose independent rect. 19 2
37 292.28 wind 5 43200 > th dose independent rect. 5 23
41 292.32 wind 5 43200 > th dose dependent rect. 3 19
42 292.35 wind 5 43200 > th dose independent no NA NA
43 292.36 wind 5 43200 > th dose dependent rect. 8 15
44 292.38 wind 5 43200 < th dose independent rect. 14 22
67 292.55 wind 7 43200 < th dose independent rect. 12 17
72 292.57 wind 7 43200 > th dose independent rect. 12 21
73 292.57 wind 5 43200 < th dose independent rect. 17 23
76 292.60 wind 5 43200 < th dose independent rect. 19 2
77 292.60 wind 7 43200 < th dose independent rect. 12 19
93 292.69 wind 5 43200 < th dose independent rect. 24 23
96 292.71 wind 5 43200 > th dose independent rect. 17 23
101 292.73 wind 5 43200 < th dose independent no NA NA
106 292.76 wind 5 43200 < th dose independent rect. 3 23
110 292.79 wind 5 43200 < th dose independent rect. 7 23
112 292.79 wind 5 43200 > th dose dependent sin 15 NA
114 292.80 wind 5 43200 < th dose independent rect. 19 23
116 292.84 wind 7 43200 < th dose independent rect. 10 19
117 292.84 wind 5 43200 < th dose independent rect. 5 23
150 293.05 wind 5 43200 > th dose independent rect. 20 23
198 293.33 wind 7 43200 < th dose independent rect. 3 19
226 293.50 wind 7 43200 < th dose independent rect. 6 16
229 293.51 wind 7 43200 > th dose independent rect. 6 16
236 293.55 wind 7 43200 < th dose independent rect. 8 20
243 293.60 wind 7 43200 > th dose independent sin 16 NA
247 293.62 wind 5 43200 > th dose dependent no NA NA
248 293.63 wind 7 43200 < th dose independent rect. 8 16
274 293.76 wind 7 43200 > th dose independent rect. 8 16
278 293.78 wind 7 43200 < th dose independent rect. 10 15
292 293.83 wind 7 43200 < th dose independent sin 16 NA
333 294.00 wind 7 43200 > th dose independent rect. 10 15
358 294.07 wind 3 43200 > th dose dependent rect. 20 1
382 294.19 wind 5 43200 > th dose dependent rect. 17 23
386 294.20 wind 5 43200 > th dose dependent rect. 19 23
439 294.48 wind 7 43200 > th dose dependent rect. 14 14
460 294.63 wind 5 43200 > th dose independent sin 13 NA
505 294.91 wind 5 43200 < th dose independent sin 13 NA
560 295.34 wind 3 43200 > th dose dependent rect. 19 3
675 296.59 wind 5 43200 > th dose independent sin 1 NA
692 296.79 wind 5 43200 > th dose dependent rect. 17 5
714 297.01 wind 5 43200 > th dose independent rect. 16 15
726 297.10 wind 5 43200 < th dose independent rect. 16 16
734 297.17 wind 5 43200 < th dose independent sin 1 NA
838 298.22 humidity 80 43200 < th dose independent rect. 22 1
898 298.91 wind 9 43200 < th dose dependent rect. 20 2
908 298.97 temperature 25 720 > th dose dependent rect. 18 14
933 299.13 wind 5 43200 > th dose dependent rect. 9 7
1000 299.68 wind 5 43200 > th dose independent rect. 6 10