Os11g0498600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HVA22 protein.
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Os11g0498600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HVA22 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.1 | 0.728 | 10.5 | -4.47 | 0.687 | 3.29 | -0.495 | -10.1 | -0.0303 | 22.7 | 25.51 | 1237 | -- | -- |
| 278.44 | 0.777 | 10.4 | -2.98 | 1 | 3.39 | -0.474 | -- | -0.157 | 23.5 | 12.26 | 7765 | -- | -- |
| 241.03 | 0.723 | 10.5 | -4.53 | 0.679 | 3.32 | -- | -10.5 | -0.0314 | 22.8 | 25.56 | 1232 | -- | -- |
| 279.48 | 0.779 | 10.4 | -2.96 | 0.967 | 3.29 | -- | -- | -0.18 | 23.3 | 12.27 | 8394 | -- | -- |
| 257.46 | 0.747 | 10.5 | -4.36 | -- | 3.56 | -- | -9.42 | -0.299 | -- | 23.58 | 1081 | -- | -- |
| 460.92 | 1.01 | 10.2 | -1.22 | 1.08 | -- | -0.411 | -- | 0.779 | 23.6 | -- | -- | -- | -- |
| 461.64 | 1.01 | 10.2 | -1.2 | 1.08 | -- | -- | -- | 0.78 | 23.6 | -- | -- | -- | -- |
| 294.59 | 0.799 | 10.2 | -1.96 | -- | 2.6 | -- | -- | 0.501 | -- | 25.3 | 1081 | -- | -- |
| 379.67 | 0.908 | 10.2 | -- | 1.03 | 1.68 | -- | -- | 0.679 | 22.7 | 27.9 | 6953 | -- | -- |
| 534.89 | 1.08 | 10.2 | -1.17 | -- | -- | -- | -- | 0.792 | -- | -- | -- | -- | -- |
| 499.87 | 1.05 | 10.2 | -- | 1.07 | -- | -- | -- | 0.914 | 23.6 | -- | -- | -- | -- |
| 384.83 | 0.914 | 10.1 | -- | -- | 2.22 | -- | -- | 0.939 | -- | 26.49 | 1076 | -- | -- |
| 571.26 | 1.12 | 10.1 | -- | -- | -- | -- | -- | 0.923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 239.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 241.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 51 | 245.65 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 62 | 246.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 149 | 249.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 295 | 251.22 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 355 | 253.50 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 361 | 253.62 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 364 | 253.74 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 427 | 255.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 488 | 257.51 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 500 | 257.96 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 525 | 258.32 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 541 | 258.60 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 542 | 258.61 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 581 | 259.57 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 582 | 259.59 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 586 | 259.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 604 | 259.94 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 609 | 260.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 614 | 260.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 637 | 260.39 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 647 | 260.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 665 | 260.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 667 | 260.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 701 | 261.09 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 704 | 261.10 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 708 | 261.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 715 | 261.16 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 730 | 261.25 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 744 | 261.33 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 780 | 261.53 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 782 | 261.54 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 811 | 261.68 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 834 | 261.81 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 838 | 261.85 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 842 | 261.87 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 901 | 262.22 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 22 |
| 902 | 262.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 929 | 262.39 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 976 | 262.69 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 981 | 262.72 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 23 |