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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0747500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HVA22-like protein e (AtHVA22e).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0403) R2 : 0.756
β1 : -1.88 (0.148) R2dD : 0.0901 R2D : 0.0427
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.88 (0.107) R2dE : 0.71 R2E : 0.668
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.248 (0.0861) R2dN8 : 0.00602 R2N8 : -0.00605
σ : 0.754
deviance : 262.2
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 4.902
memory length : 43
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.6
open length of G : 14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.65 0.751 5.74 -1.9 0.394 3.83 1.06 -0.102 -0.272 2.3 8.176 60 15.4 14.1
254.87 0.744 5.73 -1.89 0.406 3.81 1.05 -- -0.268 2.32 8.21 52 15.5 14
257.74 0.748 5.73 -1.85 0.373 3.85 -- 0.738 -0.255 2.95 7.575 52 15.4 14.1
258.25 0.748 5.74 -1.92 0.393 3.9 -- -- -0.285 3.12 8.055 48 15.5 14
261.4 0.753 5.71 -1.75 -- 3.81 -- 1.22 -0.202 -- 4.301 54 15.5 14
458.43 1 5.78 -1.45 3 -- 1.18 -- -0.135 22.7 -- -- -- --
464.2 1.01 5.78 -1.5 3 -- -- -- -0.138 22.7 -- -- -- --
262.2 0.754 5.73 -1.88 -- 3.88 -- -- -0.248 -- 4.902 43 15.6 14
351.73 0.873 5.7 -- 0.431 3.47 -- -- -0.0587 1.24 6.324 38 15.6 14
1019.76 1.49 5.7 -1.44 -- -- -- -- -0.121 -- -- -- -- --
523.47 1.07 5.74 -- 2.99 -- -- -- 0.0286 22.7 -- -- -- --
352.92 0.875 5.68 -- -- 3.58 -- -- -0.0184 -- -0.04793 52 15.5 14
1074.48 1.53 5.67 -- -- -- -- -- 0.0385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.07 temperature 10.0 90 > th dose dependent rect. 15 14
6 282.63 temperature 15.0 10 > th dose dependent rect. 15 15
38 300.21 temperature 10.0 270 > th dose dependent rect. 23 20
41 300.39 radiation 1.0 270 < th dose independent rect. 5 19
46 301.12 temperature 30.0 90 < th dose dependent rect. 5 22
54 302.31 temperature 25.0 720 > th dose dependent rect. 17 16
55 302.33 radiation 1.0 270 < th dose dependent rect. 5 19
61 304.05 temperature 10.0 720 > th dose dependent rect. 16 9
81 306.01 temperature 15.0 270 > th dose dependent rect. 23 6
86 306.52 radiation 1.0 270 < th dose independent rect. 4 21
107 308.11 precipitation 0.1 90 < th dose independent rect. 15 14
108 308.11 precipitation 0.1 90 < th dose dependent rect. 15 14
117 308.86 temperature 25.0 720 > th dose dependent sin 11 NA
127 309.75 temperature 20.0 90 > th dose independent rect. 14 15
129 309.78 temperature 20.0 270 > th dose independent rect. 24 18
150 311.20 temperature 20.0 10 > th dose independent rect. 15 15
156 311.40 temperature 20.0 720 > th dose dependent sin 15 NA
164 312.10 temperature 20.0 270 > th dose dependent rect. 12 21
226 314.74 temperature 10.0 90 > th dose independent rect. 5 10
227 314.74 atmosphere 1015.0 90 < th dose independent rect. 5 10
228 314.74 temperature 10.0 90 > th dose independent rect. 15 14
234 314.97 temperature 30.0 720 < th dose dependent rect. 17 6
235 315.10 radiation 40.0 90 < th dose independent rect. 15 14
241 315.36 precipitation 0.1 90 < th dose independent rect. 5 10
242 315.36 precipitation 0.1 90 < th dose dependent rect. 5 10
264 316.12 temperature 30.0 720 < th dose dependent rect. 19 2
265 316.13 temperature 10.0 720 > th dose dependent sin 16 NA
270 316.23 temperature 30.0 270 < th dose dependent rect. 17 17
276 316.34 temperature 25.0 720 > th dose dependent rect. 17 2
314 318.02 atmosphere 995.0 90 > th dose independent rect. 5 10
317 318.22 wind 9.0 90 < th dose independent rect. 15 14
322 318.40 temperature 20.0 270 > th dose independent rect. 23 6
351 319.55 temperature 30.0 270 < th dose dependent rect. 3 21
358 319.80 temperature 20.0 270 > th dose dependent rect. 1 2
365 320.05 wind 1.0 90 > th dose independent rect. 5 10
423 321.75 temperature 10.0 720 > th dose dependent rect. 7 20
436 321.92 wind 5.0 43200 > th dose dependent rect. 13 20
442 321.99 temperature 30.0 90 < th dose dependent rect. 19 16
444 322.04 temperature 25.0 1440 > th dose dependent rect. 7 18
458 322.19 wind 9.0 90 < th dose independent rect. 5 10
499 322.67 temperature 25.0 1440 > th dose dependent rect. 11 23
502 322.71 temperature 30.0 720 < th dose dependent sin 16 NA
508 322.76 temperature 25.0 1440 > th dose dependent no NA NA
512 322.78 temperature 25.0 1440 > th dose dependent rect. 20 23
587 323.46 wind 5.0 43200 > th dose independent rect. 11 21
598 323.58 wind 5.0 43200 > th dose dependent rect. 2 19
601 323.60 wind 5.0 43200 > th dose dependent rect. 4 17
603 323.63 radiation 40.0 1440 < th dose dependent rect. 18 9
609 323.71 wind 5.0 43200 > th dose dependent rect. 24 21
617 323.77 wind 5.0 43200 > th dose dependent rect. 6 15
652 324.06 wind 5.0 43200 < th dose independent rect. 10 21
655 324.07 radiation 30.0 1440 < th dose dependent rect. 18 7
737 324.61 radiation 1.0 270 < th dose independent rect. 15 9
752 324.68 wind 5.0 43200 > th dose dependent rect. 6 19
755 324.70 atmosphere 995.0 90 > th dose independent rect. 15 14
819 325.04 wind 5.0 43200 > th dose independent rect. 2 19
824 325.06 wind 5.0 43200 < th dose independent rect. 23 22
836 325.11 wind 5.0 43200 > th dose independent rect. 23 22
866 325.22 wind 5.0 43200 < th dose independent rect. 2 19
949 325.57 radiation 10.0 270 < th dose dependent rect. 15 9
983 325.77 wind 5.0 43200 > th dose dependent sin 23 NA
993 325.83 wind 5.0 43200 < th dose independent rect. 2 16
1000 325.85 wind 9.0 43200 > th dose dependent sin 14 NA