BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0747500 Os02g0747500|AK108482
(192 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178 221 2e-58
AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185 186 8e-48
AT5G62490.1 | chr5:25090206-25091345 FORWARD LENGTH=168 171 3e-43
AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159 124 2e-29
AT5G50720.1 | chr5:20633442-20634502 REVERSE LENGTH=117 113 5e-26
AT4G24960.1 | chr4:12828060-12828982 FORWARD LENGTH=136 106 9e-24
AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201 65 2e-11
AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178 60 1e-09
AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316 58 3e-09
AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297 58 4e-09
AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259 55 3e-08
>AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178
Length = 177
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 134/160 (83%), Gaps = 3/160 (1%)
Query: 1 MGSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITL 60
MGSG+G+FLKV+++N DVLAGP+VSL YPLYASV+AIET+S DD+QWLTYWVLYS +TL
Sbjct: 1 MGSGAGNFLKVLLRNFDVLAGPVVSLVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTL 60
Query: 61 FELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRK 120
ELTF+ ++EWLP+WSY KL CWLV+PYF+GAA+VYEHFVRP+ VN + +NIWY+P+K
Sbjct: 61 IELTFAKLIEWLPIWSYMKLILTCWLVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKK 120
Query: 121 -DESDRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTRR 159
D +PDDV++AA++YI +NG AFE +++ +A ++R
Sbjct: 121 MDIFRKPDDVLTAAEKYIAENGPDAFEKILS--RADKSKR 158
>AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185
Length = 184
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 6/165 (3%)
Query: 2 GSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLF 61
SG + L+V++KN DVLA P+V+L YPLYASV+AIET+S +D+QWLTYWVLY+ I+LF
Sbjct: 4 NSGDDNVLQVLIKNFDVLALPLVTLVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLF 63
Query: 62 ELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQ--IVNIWYIPR 119
ELTFS LEW P+W Y KLF CWLVLP FNGA H+Y+HF+RP + Q IWY+P
Sbjct: 64 ELTFSKPLEWFPIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPH 123
Query: 120 KDESDRP----DDVISAAQRYIEQNGSRAFESLVNKFKASNTRRS 160
K + P DD+++AA++Y+EQ+G+ AFE ++ K + RS
Sbjct: 124 KKFNFFPKRDDDDILTAAEKYMEQHGTEAFERMIVKKDSYERGRS 168
>AT5G62490.1 | chr5:25090206-25091345 FORWARD LENGTH=168
Length = 167
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 105/144 (72%), Gaps = 4/144 (2%)
Query: 1 MGSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITL 60
M SG GS +KV+ KN DV+AGP++SL YPLYASVRAIE++S DD+QWLTYW LYS I L
Sbjct: 1 MSSGIGSLVKVIFKNFDVIAGPVISLVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKL 60
Query: 61 FELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRK 120
FELTF +LEW+PL+ YAKL WLVLP NGAA++YEH+VR +++ VN+WY+P K
Sbjct: 61 FELTFFRLLEWIPLYPYAKLALTSWLVLPGMNGAAYLYEHYVRSFLLSPHTVNVWYVPAK 120
Query: 121 DESDRPDDVISAAQRYIEQNGSRA 144
+ DD+ + A ++ N S A
Sbjct: 121 KD----DDLGATAGKFTPVNDSGA 140
>AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159
Length = 158
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 71/100 (71%)
Query: 7 SFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFS 66
F+ + K D L GP V L YPLYAS RAIE+ + +DDQQWLTYW++YS IT+FEL+
Sbjct: 2 GFIIAIAKRFDALVGPGVMLLYPLYASFRAIESPTMLDDQQWLTYWIIYSLITIFELSVW 61
Query: 67 PVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMV 106
VL WLP W Y KL F WLVLP F+GAA++Y +FVR V
Sbjct: 62 RVLAWLPFWPYLKLLFCMWLVLPMFSGAAYIYSNFVRQYV 101
>AT5G50720.1 | chr5:20633442-20634502 REVERSE LENGTH=117
Length = 116
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 64/88 (72%)
Query: 16 LDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLW 75
L LAGP+V L YPLYASV AIE+ S VDD+QWL YW+LYSF+TL EL +LEW+P+W
Sbjct: 11 LHSLAGPVVMLLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIW 70
Query: 76 SYAKLFFNCWLVLPYFNGAAHVYEHFVR 103
AKL F WLVLP F GAA +Y VR
Sbjct: 71 YTAKLVFVAWLVLPQFRGAAFIYNKVVR 98
>AT4G24960.1 | chr4:12828060-12828982 FORWARD LENGTH=136
Length = 135
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 61/84 (72%)
Query: 20 AGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAK 79
AGPIV L YPLYASV A+E+ + VDD+QWL YW++YSF++L EL ++EW+P+W K
Sbjct: 15 AGPIVMLLYPLYASVIAMESTTKVDDEQWLAYWIIYSFLSLTELILQSLIEWIPIWYTVK 74
Query: 80 LFFNCWLVLPYFNGAAHVYEHFVR 103
L F WLVLP F GAA +Y VR
Sbjct: 75 LVFVAWLVLPQFQGAAFIYNRVVR 98
>AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201
Length = 200
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 24 VSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFN 83
+ + P+Y++ +AIE+ + Q+ L YW Y +L E+ ++ W PL+ + K F
Sbjct: 44 IGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFSLVEVFTDKIISWFPLYYHVKFAFL 103
Query: 84 CWLVLPYFNGAAHVYEHFVRPMVVNQQ 110
WL LP G+ +Y + +RP ++ Q
Sbjct: 104 VWLQLPTVEGSKQIYNNQIRPFLLRHQ 130
>AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178
Length = 177
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 27 AYPLYASVRAIE-TKSAVDDQQ-WLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFNC 84
AYP Y + +E K + Q W YW++ + +T+FE ++ WLP++S AKL F
Sbjct: 17 AYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWLPMYSEAKLAFFI 76
Query: 85 WLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRKDESDR---------PDDVISAAQR 135
+L P G +VY+ F RP + + +E DR D + Q+
Sbjct: 77 YLWFPKTKGTTYVYDSFFRPYIAKHE----------NEIDRNLVKVKTRAKDMAMIYLQK 126
Query: 136 YIEQNGSRAFESL 148
I Q ++ FE L
Sbjct: 127 AINQGQTKFFEIL 139
>AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316
Length = 315
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 27 AYPLYASVRAIETKSAVDDQQ---WLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFN 83
AYP Y +A+E K+ + QQ W YW+L + +T+FE + W+PL+ AKL F
Sbjct: 17 AYPAYECYKAVE-KNKPEMQQLRFWCQYWILVAALTIFERVGDALASWVPLYCEAKLAFF 75
Query: 84 CWLVLPYFNGAAHVYEHFVRPMVVNQQ 110
+L P G +VY+ F +P V +
Sbjct: 76 IYLWFPKTRGTTYVYDSFFQPYVAKHE 102
>AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297
Length = 296
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 23 IVSLAYPLYASVRAIETKSAVDDQQ--WLTYWVLYSFITLFELTFSPVLEWLPLWSYAKL 80
++ AYP Y + +E +Q W YW+L + +T+FE + W+P++S AKL
Sbjct: 13 VLGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAFVSWVPMYSEAKL 72
Query: 81 FFNCWLVLPYFNGAAHVYEHFVRP 104
F +L P G +VYE F RP
Sbjct: 73 AFFIYLWYPKTRGTTYVYESFFRP 96
>AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259
Length = 258
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 23 IVSLAYPLYASVRAIETKSAVDDQQ---WLTYWVLYSFITLFELTFSPVLEWLPLWSYAK 79
I+ YP + + +E K+ VD ++ W YW+L + I+ FE + WLPL+ K
Sbjct: 13 ILGYTYPAFECFKTVE-KNKVDIEELRFWCQYWILLALISSFERVGDFFISWLPLYGEMK 71
Query: 80 LFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQ 110
+ F +L P G HVYE ++P + +
Sbjct: 72 VVFFVYLWYPKTKGTRHVYETLLKPYMAQHE 102
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,754,202
Number of extensions: 142197
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 11
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)