BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0747500 Os02g0747500|AK108482
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0747500 Similar to HVA22-like protein e (AtHVA22e) 350 3e-97
Os06g0226600 TB2/DP1 and HVA22 related protein family protein 263 4e-71
Os11g0602300 Similar to HVA22-like protein a (AtHVA22a) 212 1e-55
Os11g0498600 Similar to HVA22 protein 108 3e-24
Os09g0450600 TB2/DP1 and HVA22 related protein family protein 87 5e-18
>Os02g0747500 Similar to HVA22-like protein e (AtHVA22e)
Length = 192
Score = 350 bits (899), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/192 (89%), Positives = 172/192 (89%)
Query: 1 MGSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITL 60
MGSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITL
Sbjct: 1 MGSGSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITL 60
Query: 61 FELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRK 120
FELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRK
Sbjct: 61 FELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRK 120
Query: 121 DESDRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTRRSILXXXXXXXXXXXXXXXXXX 180
DESDRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTRRSIL
Sbjct: 121 DESDRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTRRSILEEVEAERRAKAELEAEAR 180
Query: 181 XXNPFFNQNYRY 192
NPFFNQNYRY
Sbjct: 181 DENPFFNQNYRY 192
>Os06g0226600 TB2/DP1 and HVA22 related protein family protein
Length = 193
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 127/191 (66%), Positives = 150/191 (78%), Gaps = 3/191 (1%)
Query: 4 GSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFEL 63
GSGSFLK++ N DVLAGP+VSLAYPLYASVRAIETKS VDDQQWLTYWVLYSFITLFEL
Sbjct: 2 GSGSFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFEL 61
Query: 64 TFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRKDES 123
TF+PV+EWLP WSYAKLFFNCWLVLP F+GAA+VY+HFVRPM VN+QIVN+WY+PRK+
Sbjct: 62 TFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVNVWYVPRKENL 121
Query: 124 DRPDDVISAAQRYIEQNGSRAFESLVNK-FKASNTRRSILXXXXXXXXXXXXXXXXXXX- 181
+PDDV+SAA+RYIEQNG AFE L++K + S ++RS
Sbjct: 122 SKPDDVLSAAERYIEQNGPEAFEKLISKSTRPSTSKRSTKQSILEEVESEHMARAERESW 181
Query: 182 -XNPFFNQNYR 191
NPF+++NYR
Sbjct: 182 GENPFYDKNYR 192
>Os11g0602300 Similar to HVA22-like protein a (AtHVA22a)
Length = 314
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 4 GSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFEL 63
GSGS LKV+ KN DVLAGP+V+LAYPLYASV+AIETKS VDDQQWLTYWV+YS ITLFEL
Sbjct: 2 GSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFEL 61
Query: 64 TFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRKDES 123
TF+ +++WLP W KL F CWLVLPYFNGAA VY+++VRPM V Q+VNIWY+P+K
Sbjct: 62 TFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKGL 121
Query: 124 -DRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTR 158
+ DD ++A ++IE+NG A + L NK S+ +
Sbjct: 122 FGKSDDFLTALDKFIEENGPEALKKLTNKAGKSSKQ 157
>Os11g0498600 Similar to HVA22 protein
Length = 152
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 66/95 (69%)
Query: 9 LKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPV 68
L ++ ++ LAGP V L YPLYASV+A+E+ S +DD+QWL YW+LYSFITL E+ +
Sbjct: 4 LWTILTHVHSLAGPTVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLLESL 63
Query: 69 LEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVR 103
+ W+P+W KL F WL LP F GAA +Y FVR
Sbjct: 64 IYWIPIWYELKLLFIAWLALPNFRGAAFIYNRFVR 98
>Os09g0450600 TB2/DP1 and HVA22 related protein family protein
Length = 98
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%)
Query: 37 IETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAH 96
+E+ S VDD+QWL YW+LYS ITL E+ VL W+PLW AK+ F WLVLP F GA+
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
Query: 97 VYEHFVRPMVVNQQI 111
+Y+ FVR + ++
Sbjct: 61 IYDKFVREQLKKNRV 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,672,906
Number of extensions: 207362
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 5
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)