Os11g0602300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HVA22-like protein a (AtHVA22a).
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Os11g0602300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HVA22-like protein a (AtHVA22a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.4 | 0.377 | 8.31 | -0.992 | 0.107 | 0.963 | 0.745 | -0.642 | -0.652 | 11.6 | 10.01 | 1434 | -- | -- |
| 65.24 | 0.376 | 8.31 | -0.94 | 0.0845 | 0.962 | 0.763 | -- | -0.652 | 11.5 | 10.01 | 1432 | -- | -- |
| 66.06 | 0.379 | 8.32 | -0.955 | 0.22 | 0.987 | -- | -0.908 | -0.664 | 11.5 | 10.01 | 1355 | -- | -- |
| 67.62 | 0.383 | 8.29 | -0.872 | 0.103 | 0.965 | -- | -- | -0.636 | 12 | 10 | 1436 | -- | -- |
| 67.46 | 0.383 | 8.32 | -0.987 | -- | 0.959 | -- | -0.77 | -0.678 | -- | 10.01 | 1440 | -- | -- |
| 90.68 | 0.446 | 8.23 | -0.586 | 0.0687 | -- | 0.618 | -- | -0.328 | 10.8 | -- | -- | -- | -- |
| 92.27 | 0.45 | 8.23 | -0.561 | 0.066 | -- | -- | -- | -0.325 | 11.5 | -- | -- | -- | -- |
| 68.08 | 0.384 | 8.29 | -0.878 | -- | 0.977 | -- | -- | -0.632 | -- | 10.02 | 1467 | -- | -- |
| 82.77 | 0.424 | 8.26 | -- | 0.121 | 0.932 | -- | -- | -0.416 | 1.02 | 5.02 | 1521 | -- | -- |
| 92.55 | 0.45 | 8.23 | -0.562 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 100.55 | 0.469 | 8.21 | -- | 0.0727 | -- | -- | -- | -0.263 | 12 | -- | -- | -- | -- |
| 82.64 | 0.423 | 8.25 | -- | -- | 0.851 | -- | -- | -0.404 | -- | 5.172 | 1487 | -- | -- |
| 100.88 | 0.469 | 8.21 | -- | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 2 | 60.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 4 | 60.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 54 | 62.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 56 | 62.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 84 | 63.08 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 99 | 63.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 138 | 63.70 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 139 | 63.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 200 | 63.98 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 250 | 64.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 256 | 64.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 266 | 64.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 272 | 64.42 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 275 | 64.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 280 | 64.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 296 | 64.45 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 366 | 64.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 367 | 64.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 373 | 64.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 378 | 64.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 384 | 64.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 385 | 64.52 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 388 | 64.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 396 | 64.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 410 | 64.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 459 | 64.73 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 510 | 64.83 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 520 | 64.85 | humidity | 70 | 1440 | > th | dose independent | sin | 16 | NA |
| 529 | 64.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 556 | 64.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 559 | 64.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 569 | 64.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 574 | 64.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 791 | 65.41 | humidity | 60 | 1440 | > th | dose dependent | sin | 20 | NA |
| 914 | 65.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 942 | 65.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 4 |