BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0602300 Os11g0602300|AK103473
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0602300 Similar to HVA22-like protein a (AtHVA22a) 449 e-127
Os06g0226600 TB2/DP1 and HVA22 related protein family protein 230 1e-60
Os02g0747500 Similar to HVA22-like protein e (AtHVA22e) 210 1e-54
Os11g0498600 Similar to HVA22 protein 117 1e-26
Os09g0450600 TB2/DP1 and HVA22 related protein family protein 88 6e-18
>Os11g0602300 Similar to HVA22-like protein a (AtHVA22a)
Length = 314
Score = 449 bits (1156), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/314 (73%), Positives = 230/314 (73%)
Query: 1 MGSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFE 60
MGSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFE
Sbjct: 1 MGSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFE 60
Query: 61 LTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKG 120
LTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKG
Sbjct: 61 LTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKG 120
Query: 121 LFGKSDDFLTALDKFIEENGPEALKKLTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
LFGKSDDFLTALDKFIEENGPEALKKLTN
Sbjct: 121 LFGKSDDFLTALDKFIEENGPEALKKLTNKAGKSSKQSGKSWKDSKSSKESKDSKSSKES 180
Query: 181 XXXXXXXXXXQLKPPKVSKESKPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
QLKPPKVSKESKPL
Sbjct: 181 KEPKPSKDSKQLKPPKVSKESKPLKDSKEDKKAVKEDKKAAAKDSKEQKKALKDSKELKK 240
Query: 241 XXXXXXXQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPTSEYHSVYPEHNSWS 300
QGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPTSEYHSVYPEHNSWS
Sbjct: 241 ALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPTSEYHSVYPEHNSWS 300
Query: 301 SSFMIFEDENSYWN 314
SSFMIFEDENSYWN
Sbjct: 301 SSFMIFEDENSYWN 314
>Os06g0226600 TB2/DP1 and HVA22 related protein family protein
Length = 193
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%), Gaps = 1/149 (0%)
Query: 1 MGSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFE 60
MGSGS LK+LA NFDVLAGPLV+LAYPLYASV+AIETKSPVDDQQWLTYWV+YS ITLFE
Sbjct: 1 MGSGSFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFE 60
Query: 61 LTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKG 120
LTFA +I+WLPFW KL F CWLVLP F+GAA+VY ++VRPMFV Q+VN+WYVP+K+
Sbjct: 61 LTFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVNVWYVPRKEN 120
Query: 121 LFGKSDDFLTALDKFIEENGPEALKKLTN 149
L K DD L+A +++IE+NGPEA +KL +
Sbjct: 121 L-SKPDDVLSAAERYIEQNGPEAFEKLIS 148
>Os02g0747500 Similar to HVA22-like protein e (AtHVA22e)
Length = 192
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Query: 2 GSGSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFEL 61
GSGS LKV+ KN DVLAGP+V+LAYPLYASV+AIETKS VDDQQWLTYWV+YS ITLFEL
Sbjct: 4 GSGSFLKVVVKNLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFEL 63
Query: 62 TFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMVNIWYVPQKKGL 121
TF+ +++WLP W KL F CWLVLPYFNGAA VY+++VRPM V Q+VNIWY+P+K
Sbjct: 64 TFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIVNIWYIPRKDES 123
Query: 122 FGKSDDFLTALDKFIEENGPEALKKLTN 149
+ DD ++A ++IE+NG A + L N
Sbjct: 124 -DRPDDVISAAQRYIEQNGSRAFESLVN 150
>Os11g0498600 Similar to HVA22 protein
Length = 152
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 4 GSLLKVLAKNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFELTF 63
G L +L + LAGP V L YPLYASV+A+E+ S +DD+QWL YW++YS ITL E+
Sbjct: 2 GKLWTILT-HVHSLAGPTVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLL 60
Query: 64 ASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQM 109
S+I W+P W +KL+FI WL LP F GAAF+Y +VR KH +
Sbjct: 61 ESLIYWIPIWYELKLLFIAWLALPNFRGAAFIYNRFVREQLRKHGL 106
>Os09g0450600 TB2/DP1 and HVA22 related protein family protein
Length = 98
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 35 IETKSPVDDQQWLTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAF 94
+E+ S VDD+QWL YW++YSLITL E+ ++ W+P W K++F+ WLVLP F GA+F
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASF 60
Query: 95 VYQNYVRPMFVKHQM 109
+Y +VR K+++
Sbjct: 61 IYDKFVREQLKKNRV 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,037,004
Number of extensions: 270757
Number of successful extensions: 536
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 6
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)