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Os06g0226600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0179) R2 : 0.00686
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.067 (0.0377) R2dN8 : 0.00886 R2N8 : 0.00686
σ : 0.338
deviance : 52.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.4 0.302 11.2 0.254 0.215 0.657 0.0119 1.5 0.0136 8.54 0.2815 4559 -- --
42.51 0.304 11.2 0.272 0.256 0.832 0.0746 -- 0.0134 8.33 0.7321 2366 -- --
41.4 0.3 11.2 0.253 0.215 0.657 -- 1.5 0.0135 8.54 0.2819 4560 -- --
42.02 0.302 11.2 0.298 0.221 0.745 -- -- 0.0314 8.33 0.5 2265 -- --
43.9 0.309 11.2 0.255 -- 0.652 -- 1.46 0.0151 -- 0.3313 4798 -- --
49.66 0.33 11.2 0.0611 0.212 -- -0.000197 -- 0.072 8.67 -- -- -- --
49.66 0.33 11.2 0.0611 0.212 -- -- -- 0.072 8.67 -- -- -- --
44.34 0.31 11.2 0.29 -- 0.762 -- -- 0.0263 -- 0.4329 2216 -- --
43.78 0.308 11.2 -- 0.218 0.591 -- -- 0.00192 8.36 0.5601 2421 -- --
52.19 0.338 11.2 0.0616 -- -- -- -- 0.0738 -- -- -- -- --
49.76 0.33 11.2 -- 0.212 -- -- -- 0.0652 8.65 -- -- -- --
46.24 0.317 11.2 -- -- 0.593 -- -- 0.0106 -- 0.5601 2192 -- --
52.29 0.338 11.2 -- -- -- -- -- 0.067 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.43 humidity 90.0 1440 > th dose dependent rect. 6 8
3 38.61 humidity 90.0 1440 > th dose dependent rect. 6 6
5 38.73 precipitation 0.1 1440 < th dose independent rect. 5 7
7 38.73 precipitation 0.1 1440 < th dose dependent rect. 5 7
11 38.88 precipitation 0.1 14400 > th dose independent rect. 19 1
16 38.97 precipitation 0.1 14400 < th dose independent rect. 19 1
17 38.97 precipitation 0.1 14400 < th dose dependent rect. 19 1
24 39.16 wind 1.0 4320 > th dose independent rect. 17 2
25 39.18 precipitation 0.1 1440 > th dose independent rect. 5 8
27 39.19 precipitation 0.1 1440 > th dose dependent rect. 5 8
28 39.26 precipitation 0.1 14400 > th dose dependent rect. 19 1
29 39.27 precipitation 0.1 1440 > th dose independent rect. 5 6
31 39.28 precipitation 0.1 4320 < th dose independent rect. 5 2
32 39.28 wind 3.0 43200 < th dose independent rect. 1 3
33 39.28 precipitation 0.1 4320 < th dose dependent rect. 5 2
34 39.29 precipitation 0.1 1440 > th dose dependent rect. 5 6
39 39.35 precipitation 0.1 4320 > th dose dependent rect. 5 2
42 39.42 precipitation 0.1 4320 > th dose independent rect. 5 2
44 39.42 precipitation 0.1 4320 > th dose dependent rect. 18 23
48 39.47 humidity 80.0 14400 > th dose independent rect. 10 1
52 39.50 precipitation 0.1 4320 > th dose dependent rect. 3 14
54 39.52 wind 3.0 43200 > th dose independent rect. 1 3
55 39.52 wind 3.0 43200 < th dose dependent rect. 23 6
61 39.60 wind 3.0 43200 < th dose independent rect. 23 8
64 39.65 precipitation 0.1 14400 > th dose dependent rect. 13 1
69 39.68 precipitation 0.1 4320 > th dose independent rect. 3 14
75 39.70 precipitation 0.1 4320 < th dose independent rect. 3 14
76 39.70 precipitation 0.1 4320 < th dose dependent rect. 3 14
78 39.73 precipitation 0.1 4320 > th dose dependent rect. 24 17
79 39.73 precipitation 0.1 4320 > th dose dependent rect. 18 20
86 39.77 precipitation 0.1 4320 > th dose dependent rect. 13 4
90 39.79 wind 3.0 43200 > th dose independent rect. 1 6
97 39.84 precipitation 0.1 4320 > th dose dependent rect. 4 10
98 39.85 humidity 80.0 14400 < th dose independent rect. 10 1
100 39.85 precipitation 0.1 4320 > th dose dependent rect. 8 9
114 39.88 precipitation 0.1 4320 > th dose dependent rect. 18 13
147 39.99 precipitation 0.1 4320 > th dose independent rect. 18 23
151 40.00 wind 3.0 43200 < th dose dependent rect. 21 9
152 40.01 precipitation 0.1 4320 < th dose independent rect. 18 23
154 40.01 precipitation 0.1 4320 < th dose dependent rect. 18 23
155 40.02 wind 3.0 43200 < th dose independent rect. 5 2
162 40.06 wind 3.0 43200 > th dose independent rect. 5 2
164 40.07 precipitation 0.1 4320 > th dose independent rect. 13 4
183 40.13 humidity 80.0 14400 < th dose independent rect. 9 3
184 40.13 precipitation 0.1 4320 < th dose independent rect. 13 4
185 40.13 precipitation 0.1 4320 < th dose dependent rect. 13 4
192 40.16 precipitation 0.1 4320 > th dose independent rect. 1 16
202 40.18 precipitation 0.1 4320 < th dose independent rect. 1 16
205 40.18 precipitation 0.1 4320 < th dose dependent rect. 1 16
216 40.20 precipitation 0.1 4320 > th dose dependent rect. 18 3
217 40.21 humidity 90.0 1440 > th dose independent rect. 6 8
220 40.21 wind 1.0 43200 > th dose dependent rect. 23 8
222 40.22 wind 3.0 43200 < th dose independent rect. 2 1
240 40.28 humidity 90.0 14400 > th dose independent rect. 19 1
243 40.30 precipitation 0.1 14400 > th dose independent rect. 13 1
268 40.33 precipitation 0.1 4320 < th dose independent rect. 4 10
272 40.33 precipitation 0.1 4320 < th dose dependent rect. 4 10
279 40.35 precipitation 0.1 4320 > th dose independent rect. 4 10
282 40.36 humidity 90.0 14400 > th dose dependent rect. 20 1
284 40.37 precipitation 0.1 14400 < th dose independent rect. 13 1
287 40.37 precipitation 0.1 14400 < th dose dependent rect. 13 1
294 40.39 wind 3.0 43200 < th dose dependent rect. 23 13
295 40.40 humidity 80.0 14400 > th dose independent rect. 8 8
296 40.40 precipitation 0.1 4320 > th dose independent rect. 8 9
301 40.41 humidity 80.0 14400 > th dose independent rect. 9 6
318 40.43 wind 3.0 43200 < th dose independent rect. 23 14
321 40.44 humidity 90.0 1440 < th dose independent rect. 6 8
332 40.45 wind 1.0 43200 > th dose dependent rect. 5 2
346 40.47 wind 1.0 4320 < th dose independent rect. 17 2
355 40.48 wind 1.0 43200 > th dose dependent rect. 24 3
358 40.49 humidity 90.0 14400 > th dose dependent rect. 18 8
359 40.50 humidity 80.0 14400 < th dose independent rect. 9 6
369 40.51 humidity 80.0 14400 > th dose dependent rect. 9 1
387 40.53 humidity 80.0 1440 < th dose independent rect. 11 1
402 40.54 wind 1.0 43200 > th dose dependent rect. 23 5
407 40.55 wind 3.0 43200 < th dose independent sin 8 NA
412 40.55 precipitation 0.1 4320 < th dose independent rect. 8 9
416 40.55 precipitation 0.1 4320 < th dose dependent rect. 8 9
465 40.63 humidity 90.0 14400 > th dose independent rect. 6 2
480 40.65 wind 3.0 43200 < th dose dependent sin 8 NA
513 40.68 humidity 80.0 14400 > th dose dependent rect. 8 3
528 40.70 humidity 90.0 14400 < th dose independent rect. 6 2
542 40.71 wind 3.0 43200 > th dose independent rect. 1 13
560 40.73 humidity 90.0 14400 > th dose dependent sin 15 NA
590 40.76 precipitation 0.1 1440 > th dose independent rect. 23 14
601 40.77 wind 3.0 43200 > th dose independent sin 8 NA
607 40.77 humidity 80.0 1440 > th dose dependent rect. 10 1
619 40.78 wind 9.0 43200 < th dose dependent rect. 5 2
626 40.79 precipitation 0.1 4320 > th dose independent rect. 18 20
627 40.79 precipitation 0.1 4320 < th dose independent rect. 18 20
633 40.79 precipitation 0.1 4320 < th dose dependent rect. 18 20
663 40.83 precipitation 0.1 1440 > th dose independent rect. 23 12
672 40.83 humidity 90.0 14400 > th dose dependent rect. 7 21
683 40.85 humidity 90.0 14400 > th dose independent rect. 19 5
703 40.86 precipitation 0.1 1440 < th dose independent rect. 23 13
710 40.86 precipitation 0.1 1440 < th dose dependent rect. 23 13
715 40.87 precipitation 0.1 4320 > th dose dependent rect. 16 1
719 40.87 humidity 90.0 14400 > th dose dependent rect. 16 18
725 40.88 humidity 90.0 1440 > th dose dependent sin 23 NA
746 40.89 precipitation 0.1 4320 < th dose independent rect. 18 15
755 40.89 precipitation 0.1 4320 < th dose dependent rect. 18 15
776 40.92 humidity 80.0 14400 > th dose independent rect. 14 1
804 40.93 precipitation 0.1 4320 > th dose independent sin 3 NA
805 40.93 precipitation 0.1 4320 < th dose independent sin 3 NA
816 40.93 precipitation 0.1 4320 < th dose dependent sin 3 NA
829 40.94 precipitation 0.1 4320 > th dose independent rect. 18 15
927 40.99 humidity 90.0 14400 > th dose dependent rect. 1 22
928 41.00 humidity 80.0 1440 > th dose independent rect. 11 1
929 41.00 humidity 80.0 14400 < th dose independent rect. 14 1
938 41.00 radiation 20.0 4320 > th dose dependent rect. 6 2
987 41.02 precipitation 0.1 4320 > th dose dependent sin 5 NA
988 41.02 radiation 1.0 4320 < th dose dependent rect. 7 2
994 41.02 humidity 90.0 14400 > th dose dependent rect. 3 19