BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0226600 Os06g0226600|AK102752
(193 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178 222 1e-58
AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185 177 4e-45
AT5G62490.1 | chr5:25090206-25091345 FORWARD LENGTH=168 160 4e-40
AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159 127 4e-30
AT5G50720.1 | chr5:20633442-20634502 REVERSE LENGTH=117 114 3e-26
AT4G24960.1 | chr4:12828060-12828982 FORWARD LENGTH=136 109 9e-25
AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201 65 3e-11
AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178 62 2e-10
AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297 59 2e-09
AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316 58 3e-09
>AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178
Length = 177
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/147 (69%), Positives = 126/147 (85%), Gaps = 1/147 (0%)
Query: 2 GSGSFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFEL 61
G+G+FLK+L NFDVLAGP+VSL YPLYASV+AIET+S DD+QWLTYWVLYS +TL EL
Sbjct: 4 GAGNFLKVLLRNFDVLAGPVVSLVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTLIEL 63
Query: 62 TFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVNVWYVPRKENL 121
TFA +IEWLP WSY KL CWLV+P F GAAYVY+HFVRP+FVN + +N+WYVP+K ++
Sbjct: 64 TFAKLIEWLPIWSYMKLILTCWLVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKKMDI 123
Query: 122 -SKPDDVLSAAERYIEQNGPEAFEKLI 147
KPDDVL+AAE+YI +NGP+AFEK++
Sbjct: 124 FRKPDDVLTAAEKYIAENGPDAFEKIL 150
>AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185
Length = 184
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%), Gaps = 6/152 (3%)
Query: 2 GSGSFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFEL 61
G + L++L NFDVLA PLV+L YPLYASV+AIET+S +D+QWLTYWVLY+ I+LFEL
Sbjct: 6 GDDNVLQVLIKNFDVLALPLVTLVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLFEL 65
Query: 62 TFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVN--RQIVNVWYVPRKE 119
TF+ +EW P W Y KLF CWLVLP F+GA ++Y HF+RP + + R +WYVP K+
Sbjct: 66 TFSKPLEWFPIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKK 125
Query: 120 NLSKP----DDVLSAAERYIEQNGPEAFEKLI 147
P DD+L+AAE+Y+EQ+G EAFE++I
Sbjct: 126 FNFFPKRDDDDILTAAEKYMEQHGTEAFERMI 157
>AT5G62490.1 | chr5:25090206-25091345 FORWARD LENGTH=168
Length = 167
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 2 GSGSFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFEL 61
G GS +K++ NFDV+AGP++SL YPLYASVRAIE++S DD+QWLTYW LYS I LFEL
Sbjct: 4 GIGSLVKVIFKNFDVIAGPVISLVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKLFEL 63
Query: 62 TFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVNVWYVPRKENL 121
TF ++EW+P + YAKL WLVLP +GAAY+Y+H+VR ++ VNVWYVP K
Sbjct: 64 TFFRLLEWIPLYPYAKLALTSWLVLPGMNGAAYLYEHYVRSFLLSPHTVNVWYVPAK--- 120
Query: 122 SKPDDVLSAAERYIEQNGPEAFEKLI 147
K DD+ + A ++ N A ++ I
Sbjct: 121 -KDDDLGATAGKFTPVNDSGAPQEKI 145
>AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159
Length = 158
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 71/97 (73%)
Query: 5 SFLKLLANNFDVLAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFA 64
F+ +A FD L GP V L YPLYAS RAIE+ + +DDQQWLTYW++YS IT+FEL+
Sbjct: 2 GFIIAIAKRFDALVGPGVMLLYPLYASFRAIESPTMLDDQQWLTYWIIYSLITIFELSVW 61
Query: 65 PVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVR 101
V+ WLPFW Y KL F WLVLP F GAAY+Y +FVR
Sbjct: 62 RVLAWLPFWPYLKLLFCMWLVLPMFSGAAYIYSNFVR 98
>AT5G50720.1 | chr5:20633442-20634502 REVERSE LENGTH=117
Length = 116
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 67/95 (70%)
Query: 17 LAGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYA 76
LAGP+V L YPLYASV AIE+ S VDD+QWL YW+LYSF+TL EL ++EW+P W A
Sbjct: 14 LAGPVVMLLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTA 73
Query: 77 KLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVN 111
KL F WLVLP F GAA++Y+ VR F I+
Sbjct: 74 KLVFVAWLVLPQFRGAAFIYNKVVREQFKKYGILK 108
>AT4G24960.1 | chr4:12828060-12828982 FORWARD LENGTH=136
Length = 135
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 18 AGPLVSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYAK 77
AGP+V L YPLYASV A+E+ + VDD+QWL YW++YSF++L EL +IEW+P W K
Sbjct: 15 AGPIVMLLYPLYASVIAMESTTKVDDEQWLAYWIIYSFLSLTELILQSLIEWIPIWYTVK 74
Query: 78 LFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIVNVWYV-PRKENL 121
L F WLVLP F GAA++Y+ VR F ++ + P K N+
Sbjct: 75 LVFVAWLVLPQFQGAAFIYNRVVREQFKKHGVLRSTHSKPTKPNI 119
>AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201
Length = 200
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 22 VSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFN 81
+ + P+Y++ +AIE+ + Q+ L YW Y +L E+ +I W P + + K F
Sbjct: 44 IGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFSLVEVFTDKIISWFPLYYHVKFAFL 103
Query: 82 CWLVLPCFHGAAYVYDHFVRPMFVNRQ 108
WL LP G+ +Y++ +RP + Q
Sbjct: 104 VWLQLPTVEGSKQIYNNQIRPFLLRHQ 130
>AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178
Length = 177
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 25 AYPLYASVRAIETKSPVDDQQ--WLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFNC 82
AYP Y + +E P Q W YW++ + +T+FE ++ WLP +S AKL F
Sbjct: 17 AYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWLPMYSEAKLAFFI 76
Query: 83 WLVLPCFHGAAYVYDHFVRPMF------VNRQIVNV 112
+L P G YVYD F RP ++R +V V
Sbjct: 77 YLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKV 112
>AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297
Length = 296
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 21 LVSLAYPLYASVRAIETKSPVDDQQ--WLTYWVLYSFITLFELTFAPVIEWLPFWSYAKL 78
++ AYP Y + +E P +Q W YW+L + +T+FE + W+P +S AKL
Sbjct: 13 VLGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAFVSWVPMYSEAKL 72
Query: 79 FFNCWLVLPCFHGAAYVYDHFVRP 102
F +L P G YVY+ F RP
Sbjct: 73 AFFIYLWYPKTRGTTYVYESFFRP 96
>AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316
Length = 315
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 25 AYPLYASVRAIETKSPVDDQQ--WLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFNC 82
AYP Y +A+E P Q W YW+L + +T+FE + W+P + AKL F
Sbjct: 17 AYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDALASWVPLYCEAKLAFFI 76
Query: 83 WLVLPCFHGAAYVYDHFVRP 102
+L P G YVYD F +P
Sbjct: 77 YLWFPKTRGTTYVYDSFFQP 96
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,125,295
Number of extensions: 152104
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 11
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)