BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0414600 Os09g0414600|AK069500
(109 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0414600 Similar to ZF-HD homeobox protein (Fragment) 132 4e-32
Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisati... 90 5e-19
Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ... 76 6e-15
Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisati... 75 1e-14
Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisati... 75 1e-14
Os09g0466400 Similar to ZF-HD homeobox protein 72 1e-13
Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisati... 72 1e-13
Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisati... 71 2e-13
Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisati... 68 2e-12
Os06g0337200 64 3e-11
Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisati... 64 3e-11
>Os09g0414600 Similar to ZF-HD homeobox protein (Fragment)
Length = 109
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 67/89 (75%)
Query: 1 MEAMDVKYKPLVFPNXXXXXXXXXXXXXXXXXXXXXXETVYRECLKNHAASLGGHALDGC 60
MEAMDVKYKPLVFPN ETVYRECLKNHAASLGGHALDGC
Sbjct: 1 MEAMDVKYKPLVFPNGAIKKAAKPAAVAPAVGGGGGGETVYRECLKNHAASLGGHALDGC 60
Query: 61 GEFMPSPAANPADPTSLRCAACGCHRNFH 89
GEFMPSPAANPADPTSLRCAACGCHRNFH
Sbjct: 61 GEFMPSPAANPADPTSLRCAACGCHRNFH 89
>Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 359
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 1 MEAM-DVKYKPLVFPNXXXXXXXXXXXXXXXXXXXXXXETVYRECLKNHAASLGGHALDG 59
MEA+ VKY+P+VFPN VYRECLKNHAASLGGHA+DG
Sbjct: 1 MEAVVGVKYRPVVFPNGGAAAAAAGKSKATPASATA---AVYRECLKNHAASLGGHAVDG 57
Query: 60 CGEFMPSPAANPADPTSLRCAACGCHRNFH 89
CGEFMPSPAA+ ADP SL+CAACGCHRNFH
Sbjct: 58 CGEFMPSPAADAADPASLKCAACGCHRNFH 87
>Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor
Length = 290
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
YRECLKNHA +GGHA+DGCGEFM S D +LRCAACGCHRNFH
Sbjct: 63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSID--ALRCAACGCHRNFH 109
>Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 311
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
YRECLKNHAA++GG A DGCGEFMP D +LRC+ACGCHRNFH
Sbjct: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLD--ALRCSACGCHRNFH 137
>Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 383
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 2/49 (4%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
YRECLKNHAA++GG+A DGCGEFMPS +L+C+ACGCHRNFH
Sbjct: 145 YRECLKNHAAAIGGNATDGCGEFMPS--GEEGSLEALKCSACGCHRNFH 191
>Os09g0466400 Similar to ZF-HD homeobox protein
Length = 279
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
YRECLKNHA +GGHA+DGCGEFM + D +LRCAAC CHRNFH
Sbjct: 57 YRECLKNHAVGIGGHAVDGCGEFMAAGEEGTID--ALRCAACNCHRNFH 103
>Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 283
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%), Gaps = 6/49 (12%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
Y+EC++NHAA++GG A DGCGE+M PA P SL+CAACGCHR+FH
Sbjct: 23 YKECMRNHAAAMGGQAFDGCGEYM------PASPDSLKCAACGCHRSFH 65
>Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 255
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 38 ETVYRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
E Y ECL+NHAA++GGH +DGC EFMP P + AD +L+CAACGCHR+FH
Sbjct: 42 EVRYHECLRNHAAAMGGHVVDGCREFMPMP-GDAAD--ALKCAACGCHRSFH 90
>Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 232
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 36/49 (73%), Gaps = 5/49 (10%)
Query: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
Y ECL+NHAA+ GGH +DGCGEFMP+ P L CAACGCHR+FH
Sbjct: 40 YHECLRNHAAASGGHVVDGCGEFMPASTEEP-----LACAACGCHRSFH 83
>Os06g0337200
Length = 213
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 33/52 (63%)
Query: 38 ETVYRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
ETVY+EC KNHAASLGGH P DPTSL CAACGCH NFH
Sbjct: 59 ETVYQECPKNHAASLGGHGAGRLRGVHAVVGGEPTDPTSLMCAACGCHCNFH 110
>Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 238
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Query: 40 VYRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH 89
VYREC++NHAA LG +A DGC E+ P + P L CAACGCHRNFH
Sbjct: 11 VYRECMRNHAAKLGTYANDGCCEYTP----DDGHPAGLLCAACGCHRNFH 56
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,838,959
Number of extensions: 88961
Number of successful extensions: 396
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 16
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)