BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0371300 Os09g0371300|Os09g0371300
(507 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0371300 Major facilitator superfamily protein 617 e-177
Os09g0371100 253 3e-67
Os09g0371000 Major facilitator superfamily protein 228 6e-60
Os08g0409900 Major facilitator superfamily protein 218 7e-57
Os08g0410300 Major facilitator superfamily protein 184 2e-46
Os09g0371400 169 4e-42
Os03g0809100 Major facilitator superfamily protein 136 4e-32
Os07g0208900 Major facilitator superfamily MFS_1 protein 112 7e-25
Os09g0371200 Major facilitator superfamily MFS_1 protein 103 4e-22
>Os09g0371300 Major facilitator superfamily protein
Length = 507
Score = 617 bits (1590), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/507 (67%), Positives = 343/507 (67%)
Query: 1 MGLVPXXXXXXTTWEERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTL 60
MGLVP TTWEERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTL
Sbjct: 1 MGLVPAAAAAATTWEERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTL 60
Query: 61 CRSXXXXXXXXXXXXXXSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGL 120
CRS SRHNR TFLVAVSGTFLQVAISRGLNGIGL
Sbjct: 61 CRSAVQAACYPVAAYAASRHNRAHVVAAGAFLWAAATFLVAVSGTFLQVAISRGLNGIGL 120
Query: 121 ALVIPAVQSLVADSTDDGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAF 180
ALVIPAVQSLVADSTDDGNRGAAFGWLQLT FSALLLASTTVLGVEGWRVAF
Sbjct: 121 ALVIPAVQSLVADSTDDGNRGAAFGWLQLTSSIGSIIGGFSALLLASTTVLGVEGWRVAF 180
Query: 181 HLVAAISVAVGVLVWLFAVDPHFPAGAPXXXXXXXXXXXXXXXXXXXXXXXXEXXXXXXX 240
HLVAAISVAVGVLVWLFAVDPHFPAGAP E
Sbjct: 181 HLVAAISVAVGVLVWLFAVDPHFPAGAPGDGGGGGRRGTRRGSWPGRRGRHGETAVFTTV 240
Query: 241 XXXXXSLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAH 300
SLGGLLGGKMGDALARRYPDAGRIVLSQISAGS DDPSTGVAH
Sbjct: 241 FAVATSLGGLLGGKMGDALARRYPDAGRIVLSQISAGSAVPLAAVLLLALPDDPSTGVAH 300
Query: 301 CLVLFVMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQH 360
CLVLFVMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQH
Sbjct: 301 CLVLFVMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQH 360
Query: 361 VYGFKPXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRAR 420
VYGFKP VERDREN PMTACSAIYSFLYCTYPRDRDRAR
Sbjct: 361 VYGFKPAAAGGGGGGVERDRENAASLAKALYAAIAIPMTACSAIYSFLYCTYPRDRDRAR 420
Query: 421 AMQSLXXXXXXXXXXXXXXELRHVELEEGSCXXXXXDTRRFELVXXXXXXXXXXXXXXXX 480
AMQSL ELRHVELEEGSC DTRRFELV
Sbjct: 421 AMQSLAAADAATGDTQATTELRHVELEEGSCGGGGGDTRRFELVGSEEEEKGGGERGDGD 480
Query: 481 XXXXXXXXXXXXXXADADTVRLLASRE 507
ADADTVRLLASRE
Sbjct: 481 GDGGAGVYGSGEGEADADTVRLLASRE 507
>Os09g0371100
Length = 516
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/192 (68%), Positives = 139/192 (72%)
Query: 15 EERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXX 74
E RRTLVLVNLASIMERADEALLPAVYREVGAALHATP GLGALTLCRS
Sbjct: 13 ERRRTLVLVNLASIMERADEALLPAVYREVGAALHATPAGLGALTLCRSAVQAACYPLAA 72
Query: 75 XXXSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADS 134
+RHNR TFLVAVS TFLQVAISRGLNGIGLALV+P++QSLVADS
Sbjct: 73 YSAARHNRAHVIAAGAFLWAAATFLVAVSDTFLQVAISRGLNGIGLALVVPSIQSLVADS 132
Query: 135 TDDGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLV 194
TD RG+AFGWLQL F LLLA TTV G+ GWR+AFHLVA ISV VG+L
Sbjct: 133 TDGATRGSAFGWLQLASSLGFISGGFVGLLLAQTTVFGIAGWRIAFHLVAIISVFVGILN 192
Query: 195 WLFAVDPHFPAG 206
W FAVDPHFPAG
Sbjct: 193 WFFAVDPHFPAG 204
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 138/223 (61%), Gaps = 20/223 (8%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
S GGLLGGKMGD LA RYP++GRIVLSQISAGS DDPS G+A+ +VLF
Sbjct: 284 SFGGLLGGKMGDFLALRYPNSGRIVLSQISAGSAVPLAAVLLLGLPDDPSKGIAYGIVLF 343
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+MGL ISWN ATN PI AEIVPEKSRTSIYALD F+S+L+SFAPP VG L+Q V+G++
Sbjct: 344 IMGLFISWNGPATNLPICAEIVPEKSRTSIYALDMCFKSVLSSFAPPIVGILAQRVFGYR 403
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQSL 425
++ DREN P T C++IYSFLYC+YPRDR+RAR MQSL
Sbjct: 404 ---ADDKGKSIQLDRENAASLAKALYTSIAIPFTICTSIYSFLYCSYPRDRERAR-MQSL 459
Query: 426 XXXXXXXXXXXXXXELRHVE-----LEEGSCXXXXXDTRRFEL 463
EL+ +E LE+G C D+ EL
Sbjct: 460 -----------IESELQQMEQESFCLEDGDCRFQVFDSANGEL 491
>Os09g0371000 Major facilitator superfamily protein
Length = 520
Score = 228 bits (582), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/187 (64%), Positives = 134/187 (71%)
Query: 17 RRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXX 76
RRTL LVN+A+IMERADEALLPAVYREVGAALHATP GLGALTLCRS
Sbjct: 10 RRTLALVNMAAIMERADEALLPAVYREVGAALHATPMGLGALTLCRSFVQAACYPLAAYA 69
Query: 77 XSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTD 136
R+NR TFLVAVS TF QVA++RGLNG+GLALV PA+QSLVAD +D
Sbjct: 70 AVRYNRAHVVAAGAFLWAAATFLVAVSDTFAQVAVARGLNGVGLALVTPAIQSLVADCSD 129
Query: 137 DGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWL 196
D RG+AFGWLQLT +L+LASTT++GV GWRVAFH+VA ISV VG LV L
Sbjct: 130 DTTRGSAFGWLQLTGNIGSVIGGLFSLMLASTTIMGVAGWRVAFHIVALISVIVGALVRL 189
Query: 197 FAVDPHF 203
FAVDPHF
Sbjct: 190 FAVDPHF 196
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 123/208 (59%), Gaps = 17/208 (8%)
Query: 253 GKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLFVMGLIIS 312
GKMGD LA RYPD+GRIVLSQIS+ S DD S+G H V+F+MGL IS
Sbjct: 288 GKMGDRLAVRYPDSGRIVLSQISSASAIPLAALLLLALPDDSSSGFLHGFVMFIMGLSIS 347
Query: 313 WNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFKPXXXXXX 372
WN ATNNPIFAEIVPE+SRTSIYALDRSFES+LASFAPP VG+L++H YG+ P
Sbjct: 348 WNGPATNNPIFAEIVPERSRTSIYALDRSFESVLASFAPPIVGFLAEHAYGYNPVSYGAG 407
Query: 373 XXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQSLXXXXXXX 432
DREN PM C IYS LY TYPRDR+RAR M +L
Sbjct: 408 S---SSDRENAAALAKALYTAIAIPMLLCCFIYSLLYGTYPRDRERAR-MDTL------- 456
Query: 433 XXXXXXXELRHVELEEGSCXXXXXDTRR 460
EL+ +ELE C +RR
Sbjct: 457 ----IASELQQIELER--CHRAGIGSRR 478
>Os08g0409900 Major facilitator superfamily protein
Length = 508
Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 132/187 (70%)
Query: 17 RRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXX 76
RRTLVLVNLA+IMERADEALLPAVYREVG AL ATP LGALTLCRS
Sbjct: 6 RRTLVLVNLAAIMERADEALLPAVYREVGEALRATPAALGALTLCRSSVQAACYPLAAYA 65
Query: 77 XSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTD 136
R++R TFLVAVS F QVA++RG+NGIGLALV PA+QSLVAD +D
Sbjct: 66 AVRYDRARVVALGAFLWAAATFLVAVSDNFAQVAVARGMNGIGLALVTPAIQSLVADYSD 125
Query: 137 DGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWL 196
D +RG+AFGWLQLT +++LASTT +G+ GWR+AFH+VA ISV VG+LV L
Sbjct: 126 DNSRGSAFGWLQLTGNLGSLIGGLFSIMLASTTFMGIAGWRIAFHVVALISVTVGILVRL 185
Query: 197 FAVDPHF 203
FAVDPH+
Sbjct: 186 FAVDPHY 192
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/180 (57%), Positives = 119/180 (66%), Gaps = 1/180 (0%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
SLGGL GGKMGD LA+ YP+ GRIV+SQIS+ S +DPSTG H V+F
Sbjct: 272 SLGGLFGGKMGDYLAKHYPNFGRIVISQISSASAIPLAALLLLGLPEDPSTGFLHGSVMF 331
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
++G ISWNA ATNNPIFAEIVPE+SRTSIYALDRS ES+ ASFAPP VGYL++H YG+
Sbjct: 332 IVGFCISWNAPATNNPIFAEIVPERSRTSIYALDRSLESLFASFAPPVVGYLAEHAYGYN 391
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQSL 425
P VERD+EN PM C IYS LY TYPRDR+RAR M SL
Sbjct: 392 PITYGVGISSVERDKENAAALAKALYTAIAIPMLLCCFIYSLLYQTYPRDRERAR-MDSL 450
>Os08g0410300 Major facilitator superfamily protein
Length = 389
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 111/175 (63%), Gaps = 8/175 (4%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
+LG L GG +GD ++RR+P+ GRI L+QIS+ S +DPSTGVAH V F
Sbjct: 178 ALGALFGGLVGDPVSRRFPNTGRIALAQISSASALPLAAVLLLALPNDPSTGVAHAAVFF 237
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+MG ISWNA PIFAEIVPEK+RT++YALD+ FE++ ASFAPP VG L++ V+G+K
Sbjct: 238 IMGFAISWNA-----PIFAEIVPEKARTTVYALDKCFEAVFASFAPPIVGVLAEQVFGYK 292
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRAR 420
P VE DREN PM C Y+FLYCTYPRDRDRAR
Sbjct: 293 P---VSSDASVETDRENAAALAKAVYTEIAVPMAICCLTYTFLYCTYPRDRDRAR 344
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 68/95 (71%)
Query: 108 QVAISRGLNGIGLALVIPAVQSLVADSTDDGNRGAAFGWLQLTXXXXXXXXXFSALLLAS 167
Q+AISRGLNG+GLALV+PA+ SLVAD TDD RGAAFGWLQ+T +LLA
Sbjct: 9 QMAISRGLNGVGLALVLPAISSLVADYTDDHTRGAAFGWLQMTCNLGSIMGGSFGVLLAP 68
Query: 168 TTVLGVEGWRVAFHLVAAISVAVGVLVWLFAVDPH 202
T LGV GWR+AFH VA +S +G+L+W FA DP
Sbjct: 69 VTFLGVAGWRLAFHAVALVSAVLGILMWCFAADPR 103
>Os09g0371400
Length = 490
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
SLG LLGGKMGDA+ARR+ ++GRIVL+Q+S+GS DP H LF
Sbjct: 281 SLGALLGGKMGDAMARRFKNSGRIVLAQVSSGSAVPLAAVLLLALHGDPPAAAKHGAALF 340
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+GL+ SWN ++TN PI AEIVP +SRTS+YALDR+ E++LASFAP VG L++ +YG+
Sbjct: 341 ALGLMASWNPSSTNGPILAEIVPPRSRTSVYALDRTCEAVLASFAPTVVGVLAERLYGYD 400
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRD 415
VE +R N PM C IYSFLYCTYPRD
Sbjct: 401 -LAARGGAAAVEAERRNAASLASALYTAIAVPMVLCCLIYSFLYCTYPRD 449
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 29 MERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXXXSRHNRXXXXXX 88
MERAD ALLPAVYRE+GA L A+P+ LG++ L RS +RH+R
Sbjct: 33 MERADAALLPAVYREIGAGLRASPSALGSIALSRSVVQAACYPLAAYLAARHDRLTVVAL 92
Query: 89 XXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTDDGNRGAAFGWLQ 148
FL A + + +A++ LNG+GLAL IPA+ + VADS D +RG AFGWL
Sbjct: 93 G-------AFLWAAATLLIAMAVTAALNGVGLALQIPAIYAFVADSVDGTSRGVAFGWLM 145
Query: 149 LTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWLF 197
+ LL+A T+ LG+ GWR+AF L+AA VGV + F
Sbjct: 146 VAGKVGTVGGTSLGLLMAPTSFLGIPGWRLAFLLLAAGGAVVGVSIRSF 194
>Os03g0809100 Major facilitator superfamily protein
Length = 470
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 104/183 (56%)
Query: 19 TLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXXXS 78
+L+L+NLASIMERADE LLPAVY+EV AA +A PT LG LT +
Sbjct: 13 SLILINLASIMERADENLLPAVYKEVSAAFNAGPTDLGYLTFLMNFLKSIASPLAGVLAL 72
Query: 79 RHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTDDG 138
+++R T V VS F QVA R +NG+GLA+VIPA+QS +ADS DG
Sbjct: 73 QYDRPAVLAIGTVFWAVSTGAVGVSQYFQQVAFWRAVNGLGLAIVIPALQSFIADSYKDG 132
Query: 139 NRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWLFA 198
RGA FG L L A ++A G+ GWR AF +VA +S+ +G+LV+ +
Sbjct: 133 TRGAGFGLLSLIGSIGGIGGSILATIMAGRDYWGLPGWRFAFLMVAFLSLLIGLLVYFYT 192
Query: 199 VDP 201
VDP
Sbjct: 193 VDP 195
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 248 GGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLFVM 307
G LGG + D L++ YPD+ RI+ +Q SA A + LF+M
Sbjct: 291 GSFLGGVIADRLSKYYPDSARIMCAQFSAFMGIPFSWILLTVIPQSVDYWSAFAVTLFLM 350
Query: 308 GLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFKPX 367
G+ ISW A NNP+FAE+VP K RT IYA DR+FE AS A PAVG +++ +YG+
Sbjct: 351 GITISWCATCANNPMFAEVVPPKHRTMIYAFDRAFEGSFASLAAPAVGMVTEKIYGYNAK 410
Query: 368 XXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQSL 425
V P C YS LY + RDR+ R + S+
Sbjct: 411 TVNLENGSV----AGAYALSRGLLTMMIVPFGLCFLFYSPLYFVFKRDRENVRRLPSV 464
>Os07g0208900 Major facilitator superfamily MFS_1 protein
Length = 310
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
Query: 248 GGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLFVM 307
G LGG + D L+R +PD+ R++ +Q SA A+ + LF M
Sbjct: 132 GAFLGGVIADRLSRHFPDSARVMCAQFSAFMGIPFSWILLTVIPQSVDYWSAYAVTLFFM 191
Query: 308 GLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFKPX 367
G+ ISW A + NNP+FAE+VP K RT IYA DR+FE AS A PAVG +++ +YG+
Sbjct: 192 GITISWCATSANNPMFAEVVPPKHRTMIYAFDRAFEGSFASLAAPAVGLVTEKIYGYD-- 249
Query: 368 XXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRAR 420
E P C YS LY + RDR+ A+
Sbjct: 250 --SKTVNLANGSAEGAYALSRGLLTMMIVPFGVCVLFYSPLYLVFKRDRENAK 300
>Os09g0371200 Major facilitator superfamily MFS_1 protein
Length = 227
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 59/90 (65%)
Query: 19 TLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXXXS 78
TLVLVNLASIMERADEALLPAVY+EVGAALHATP GLGALTLCRS +
Sbjct: 45 TLVLVNLASIMERADEALLPAVYQEVGAALHATPAGLGALTLCRSAVQAACYPLAAYAAA 104
Query: 79 RHNRXXXXXXXXXXXXXXTFLVAVSGTFLQ 108
RHNR T LVAVS TFLQ
Sbjct: 105 RHNRAHVIAAGAFLWAAATLLVAVSDTFLQ 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,962,219
Number of extensions: 309077
Number of successful extensions: 599
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 15
Length of query: 507
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 402
Effective length of database: 11,553,331
Effective search space: 4644439062
Effective search space used: 4644439062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)