Os08g0409900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os08g0409900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 256.54 | 0.753 | 8.14 | 1.23 | 0.766 | 2.97 | 1.71 | -7.56 | -0.17 | 19.2 | 24.84 | 6195 | 6.92 | 4 |
| 280.2 | 0.78 | 8.32 | 0.627 | 0.728 | 3.46 | 2.13 | -- | -0.511 | 19 | 22.9 | 23438 | 7.17 | 4.23 |
| 263.28 | 0.756 | 8.12 | 1.28 | 0.753 | 2.98 | -- | -7.59 | -0.107 | 19 | 24.75 | 6149 | 6.93 | 3.92 |
| 276.16 | 0.774 | 8.37 | 1.46 | 0.769 | 4.08 | -- | -- | -0.235 | 18.5 | 22.19 | 23441 | 6.97 | 3.32 |
| 293.86 | 0.798 | 8.1 | 1.17 | -- | 2.88 | -- | -7.21 | -0.0992 | -- | 24.74 | 6225 | 7.29 | 3.29 |
| 574.12 | 1.12 | 8.72 | -2.7 | 0.762 | -- | 1.84 | -- | -1.99 | 18.3 | -- | -- | -- | -- |
| 578.27 | 1.13 | 8.71 | -2.71 | 0.818 | -- | -- | -- | -1.98 | 17.1 | -- | -- | -- | -- |
| 302.85 | 0.811 | 8.34 | 1.69 | -- | 4.15 | -- | -- | -0.28 | -- | 22.08 | 24923 | 7.15 | 3.47 |
| 299.51 | 0.806 | 8.35 | -- | 0.668 | 3.32 | -- | -- | -0.394 | 17.2 | 22.3 | 20832 | 6.44 | 3.05 |
| 613.38 | 1.16 | 8.7 | -2.74 | -- | -- | -- | -- | -2 | -- | -- | -- | -- | -- |
| 771.7 | 1.3 | 8.65 | -- | 0.866 | -- | -- | -- | -1.67 | 17 | -- | -- | -- | -- |
| 317.2 | 0.829 | 8.42 | -- | -- | 3.26 | -- | -- | -0.66 | -- | 21.8 | 20698 | 5.88 | 3.23 |
| 811.17 | 1.33 | 8.64 | -- | -- | -- | -- | -- | -1.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.11 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 2 | 254.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 3 | 254.36 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 15 | 261.33 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 26 | 262.08 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 29 | 262.41 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 33 | 262.86 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 35 | 262.94 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 64 | 264.49 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 65 | 264.50 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 66 | 264.50 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 67 | 264.51 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 73 | 264.61 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 82 | 265.14 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 84 | 265.16 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 87 | 265.19 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 88 | 265.20 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 93 | 265.25 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 101 | 265.44 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 122 | 266.59 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 146 | 267.40 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 147 | 267.42 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 156 | 267.61 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 157 | 267.62 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 167 | 267.94 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 172 | 268.05 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 179 | 268.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 231 | 269.61 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 234 | 269.72 | humidity | 90.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 251 | 270.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 20 |
| 262 | 270.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 293 | 270.77 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 299 | 270.83 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 306 | 270.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 309 | 271.04 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 311 | 271.07 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 315 | 271.13 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 316 | 271.14 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 320 | 271.20 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 340 | 271.71 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 364 | 271.91 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 398 | 272.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 399 | 272.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 424 | 273.04 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 434 | 273.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 453 | 273.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 454 | 273.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 463 | 273.73 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 476 | 273.88 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 488 | 274.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 502 | 274.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 511 | 274.39 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 546 | 274.93 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 551 | 274.99 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 581 | 275.21 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 589 | 275.31 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 601 | 275.41 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 616 | 275.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 622 | 275.69 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 633 | 275.83 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 636 | 275.87 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 641 | 275.98 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 668 | 276.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 672 | 276.25 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 673 | 276.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 775 | 277.06 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 869 | 278.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 3 |