BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0409900 Os08g0409900|Os08g0409900
(508 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489 520 e-148
AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491 513 e-146
AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490 306 1e-83
AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474 251 4e-67
>AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489
Length = 488
Score = 520 bits (1339), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/467 (55%), Positives = 317/467 (67%), Gaps = 1/467 (0%)
Query: 8 TLVLVNLAAIMERADEALLPAVYREVGEALRATPAALGALTLCRSSVQXXXXXXXXXXXX 67
TLVLV LA IMERADE+LLP VY+EVG+AL P ALG LTL RS VQ
Sbjct: 7 TLVLVYLAGIMERADESLLPGVYKEVGDALHVDPTALGTLTLFRSIVQSSCYPLAAYLSS 66
Query: 68 XXXXXXXXXLGAFLWAAATFLVAVSDNFAQVAVARGMNGIGLALVTPAIQSLVADYSDDN 127
LGAFLWA ATFLVAVS F QVAV+RG+NGIGLA+VTPAIQSLVAD +DD
Sbjct: 67 RHNRAHVIALGAFLWATATFLVAVSTTFFQVAVSRGLNGIGLAIVTPAIQSLVADSTDDY 126
Query: 128 SRGSAFGWLQLTGNLGSLIGGLFSIMLASTTFMGIAGWRIAFHVVALISVTVGILVRLFA 187
+RG AFGWL T N+GS++G + SI+ AS +F G+AGWRIAF +VA++SV VGILVRLFA
Sbjct: 127 NRGMAFGWLGFTSNIGSILGYVCSILFASKSFNGVAGWRIAFLLVAVVSVIVGILVRLFA 186
Query: 188 VDPHYINFGNKKQHVRKSAWREMKDLVVEAKAVVKIPSFQIIVAQGITGSFPWSALSFAP 247
DPHY + K K W +++DL+ EAK V+KIPSFQI VAQG++GSFPWSAL+FAP
Sbjct: 187 TDPHYSDRKITKHVKDKPFWSDIRDLLKEAKMVIKIPSFQIFVAQGVSGSFPWSALAFAP 246
Query: 248 MWLELMGFTHKGTGILMVTSAVASSLGGLFGGKMGDYLAKHYPNFGRXXXXXXXXXXXXX 307
+WLEL+GF+HK T +L+ ++ SLGGLFGG MGD LAK +PN GR
Sbjct: 247 LWLELIGFSHKTTAVLVTLFTISCSLGGLFGGYMGDTLAKKFPNGGRIFLSQVSSGSAIP 306
Query: 308 XXXXXXXXXPEDPSTGFLHGSVMFIVGFCISWNAPATNNPIFAEIVPERSRTSIYALDRS 367
P+DPST F HG V+ I+G CISWN ATN PIFAEIVPER+RTSIYALDRS
Sbjct: 307 LAAILLIGLPDDPSTAFSHGLVLVIMGLCISWNGAATNGPIFAEIVPERARTSIYALDRS 366
Query: 368 LESLFASFAPPVVGYLAEHAYGYNPITYGVGIS-SVERDKENXXXXXXXXXXXXXXPMLL 426
ES+ ASFAPP+VG LA++ YGY PI G S ++ D+ N PM++
Sbjct: 367 FESILASFAPPIVGMLAQNIYGYKPIPEGSTSSVKIDTDRANAASLAKALYTSIGIPMVI 426
Query: 427 CCFIYSLLYQTYPRDRERARMDSLITSELQRIEPDRSHRTSDYYNGE 473
CC IYS LY TYPRDR+RA+M +LI SE+Q++ + + E
Sbjct: 427 CCTIYSFLYCTYPRDRDRAKMQALIESEMQQLNEEEDEIEVKCFGAE 473
>AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491
Length = 490
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/475 (55%), Positives = 326/475 (68%), Gaps = 4/475 (0%)
Query: 3 EAARRTLVLVNLAAIMERADEALLPAVYREVGEALRATPAALGALTLCRSSVQXXXXXXX 62
+A TL+LVNLA IMERADE+LLP VY+EVG AL P LG+LTL RS VQ
Sbjct: 2 KAETMTLLLVNLAGIMERADESLLPGVYKEVGLALHTDPTGLGSLTLLRSMVQAACYPLA 61
Query: 63 XXXXXXXXXXXXXXLGAFLWAAATFLVAVSDNFAQVAVARGMNGIGLALVTPAIQSLVAD 122
LGAFLW+AATFLVA S F QVAV+R +NGIGLALV PAIQSLVAD
Sbjct: 62 AYMAIRHNRAHVIALGAFLWSAATFLVAFSSTFFQVAVSRALNGIGLALVAPAIQSLVAD 121
Query: 123 YSDDNSRGSAFGWLQLTGNLGSLIGGLFSIMLASTTFMGIAGWRIAFHVVALISVTVGIL 182
+DD +RG+AFGWLQLT N+GS++GGL S+++A TFMGI GWR+AFH+V +ISV VG+L
Sbjct: 122 STDDANRGTAFGWLQLTANIGSILGGLCSVLIAPLTFMGIPGWRVAFHIVGVISVIVGVL 181
Query: 183 VRLFAVDPHYINFG---NKKQHVRKSAWREMKDLVVEAKAVVKIPSFQIIVAQGITGSFP 239
VR+FA DPH++ G + + RK E+KDLV EA V+KI SFQIIVAQG+TGSFP
Sbjct: 182 VRVFANDPHFVKDGVDVSNQPGSRKPFCTEVKDLVREADTVIKIRSFQIIVAQGVTGSFP 241
Query: 240 WSALSFAPMWLELMGFTHKGTGILMVTSAVASSLGGLFGGKMGDYLAKHYPNFGRXXXXX 299
WSALSFAPMWLEL+GF+H T LM ASSLGGLFGGKMGD+L+ PN GR
Sbjct: 242 WSALSFAPMWLELIGFSHGKTAFLMGLFVAASSLGGLFGGKMGDFLSTRLPNSGRIILAQ 301
Query: 300 XXXXXXXXXXXXXXXXXPEDPSTGFLHGSVMFIVGFCISWNAPATNNPIFAEIVPERSRT 359
P+DPST +HG ++ ++G +SWNAPATNNPIFAEIVPE+SRT
Sbjct: 302 ISSASAIPLAAILLLVLPDDPSTAAIHGLILVLLGLFVSWNAPATNNPIFAEIVPEKSRT 361
Query: 360 SIYALDRSLESLFASFAPPVVGYLAEHAYGYNPITYGVGISS-VERDKENXXXXXXXXXX 418
S+YALD+S ES+ +SFAPP+VG LA+H YGY PI G S+ + D+EN
Sbjct: 362 SVYALDKSFESILSSFAPPIVGILAQHVYGYKPIPEGSSRSTEIATDRENAASLAKALYT 421
Query: 419 XXXXPMLLCCFIYSLLYQTYPRDRERARMDSLITSELQRIEPDRSHRTSDYYNGE 473
PM CCFIYS LY++YP DR+RARM++ I SE++ + P+ S+R ++ E
Sbjct: 422 SIGLPMAACCFIYSFLYRSYPLDRDRARMEAFIDSEMRELLPESSNRDIEFSQEE 476
>AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490
Length = 489
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/456 (39%), Positives = 252/456 (55%), Gaps = 19/456 (4%)
Query: 8 TLVLVNLAAIMERADEALLPAVYREVGEALRATPAALGALTLCRSSVQXXXXXXXXXXXX 67
+L+L+NLAAIMERADE LLP+VY+EV EA A P+ LG LT R+ VQ
Sbjct: 44 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGLASPLAGVLVI 103
Query: 68 XXXXXXXXXLGAFLWAAATFLVAVSDNFAQVAVARGMNGIGLALVTPAIQSLVADYSDDN 127
+G F WA +T V S F QVA+ R +NG GLA+V PA+QS +AD D
Sbjct: 104 TYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQSFIADSYKDG 163
Query: 128 SRGSAFGWLQLTGNLGSLIGGLFSIMLASTTFMGIAGWRIAFHVVALISVTVGILVRLFA 187
+RG+ FG L L G +G + GG+ + ++A + F GI GWR AF ++A +S +G+LV LF
Sbjct: 164 ARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALSAVIGLLVFLFV 223
Query: 188 VDPHYINFGNKKQHVRK----SAWREMKDLVVEAKAVVKIPSFQIIVAQGITGSFPWSAL 243
VDP N ++ K S W D + AK+VVK+ +FQIIVAQGI GSFPW+A+
Sbjct: 224 VDPRK-NIEREELMAHKMNSNSVW---NDSLAAAKSVVKVSTFQIIVAQGIIGSFPWTAM 279
Query: 244 SFAPMWLELMGFTHKGTGILMVTSAVASSLGGLFGGKMGDYLAKHYPNFGRXXXXXXXXX 303
F MW EL+GF H T L+ A ++G L GG + D +++ YPN GR
Sbjct: 280 VFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKMSRIYPNSGRVMCAQFSAF 339
Query: 304 XXXXXXXXXXXXXPEDPSTGFLHGSVMFIVGFCISWNAPATNNPIFAEIVPERSRTSIYA 363
P+ S+ + +F++G I+W A N P+FAE+VP R RT IYA
Sbjct: 340 MGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNAPMFAEVVPPRHRTMIYA 399
Query: 364 LDRSLESLFASFAPPVVGYLAEHAYGYNPITYGV----GISSVERDKENXXXXXXXXXXX 419
DR+ E F+SFA P+VG L+E +GY+ + G+ G S E D +
Sbjct: 400 FDRAFEGSFSSFAAPLVGILSEKLFGYD--SRGIDPLKGSSVREADALS-----KGLLSM 452
Query: 420 XXXPMLLCCFIYSLLYQTYPRDRERARMDSLITSEL 455
P LCC Y+ L+ + +DRE A++ S +E+
Sbjct: 453 MAVPFGLCCLCYTPLHFVFQKDRENAKIASSKETEM 488
>AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474
Length = 473
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/455 (33%), Positives = 222/455 (48%), Gaps = 25/455 (5%)
Query: 13 NLAAIMERADEALLPAVYREVGEALRATPAALGALTLCRSSVQXXXXXXXXXXXXXXXXX 72
NLA +M+RADE L+P+ +E+ EA A + +G L+ R+ VQ
Sbjct: 19 NLATMMQRADEKLIPSTAKELKEAFHAKLSDIGLLSFIRNIVQGLASPLAGLFAISYDRP 78
Query: 73 XXXXLGAFLWAAATFLVAVSDNFAQVAVARGMNGIGLALVTPAIQSLVADYSDDNSRGSA 132
G+F W ++T VS F QV + NG+G A+V P +QS++AD ++SRG
Sbjct: 79 TVFAFGSFFWVSSTVATGVSRYFIQVTLGVAFNGVGHAIVYPVLQSIIADSFKESSRGFG 138
Query: 133 FGWLQLTGNLGSLIGGLFSIMLASTTFMGIAGWRIAFHVVALISVTVGILVRLFAVDPH- 191
FG L G +G + G + ++A F GI+GWR AF + A +S VGILV F DP
Sbjct: 139 FGLWNLIGTVGGIGGTVVPTVMAGHDFFGISGWRCAFILSATLSTIVGILVFFFVSDPRE 198
Query: 192 ----YINFGNKKQHVR-------------KSAWREMKDLVVEAKAVVKIPSFQIIVAQGI 234
+ + QH R S W+E V K V K+ +FQIIV QGI
Sbjct: 199 KKTSSVIVHHDDQHERDENNGGTMMESPSSSVWKESW---VAIKDVTKLRTFQIIVLQGI 255
Query: 235 TGSFPWSALSFAPMWLELMGFTHKGTGILMVTSAVASSLGGLFGGKMGDYLAKHYPNFGR 294
GS PW+A+ F MW EL+GF H +L A ++G L GG + D +++ +PN GR
Sbjct: 256 VGSVPWNAMLFWTMWFELIGFDHNQAALLNGIFATGQAIGSLVGGIIADKMSRVFPNSGR 315
Query: 295 XXXXXXXXXXXXXXXXXXXXXXPEDPSTGFLHGSVMFIVGFCISWNAPATNNPIFAEIVP 354
P+ ++ ++ +F++G I+W PA N+PI AEIVP
Sbjct: 316 LICAQFSVFMGAMFSIVLLRMIPQSVNSFYIFLVTLFLMGLTITWCGPAINSPILAEIVP 375
Query: 355 ERSRTSIYALDRSLESLFASFAPPVVGYLAEHAYGYNPITYGVGISSVERDKENXXXXXX 414
+ RT +YA DR+LE F+SF P+VG ++E +G++ GI V
Sbjct: 376 AKHRTMVYAFDRALEVTFSSFGAPLVGIMSEKLFGFD----AKGIDHVNDSGREAEALGK 431
Query: 415 XXXXXXXXPMLLCCFIYSLLYQTYPRDRERARMDS 449
P LCC Y+ L+ + +DR+ R S
Sbjct: 432 GIMWMMALPFGLCCLCYTPLHFLFRKDRKIDRTTS 466
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,380,323
Number of extensions: 344683
Number of successful extensions: 922
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 4
Length of query: 508
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 405
Effective length of database: 8,282,721
Effective search space: 3354502005
Effective search space used: 3354502005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)