BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0298200 Os09g0298200|AK073146
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0298200 Similar to Brittle 2 929 0.0
Os08g0345800 Similar to Glucose-1-phosphate adenylyltransfe... 813 0.0
Os03g0735000 Similar to Glucose-1-phosphate adenylyltransfe... 531 e-151
Os07g0243200 Similar to ADP-glucose pyrophosphorylase large... 513 e-145
Os01g0633100 Similar to ADP-glucose pyrophosphorylase subun... 466 e-131
Os05g0580000 Similar to ADP-glucose pyrophosphorylase (EC 2... 466 e-131
>Os09g0298200 Similar to Brittle 2
Length = 500
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/477 (97%), Positives = 464/477 (97%)
Query: 24 FYPGRDLXXXXXXXXXXXXXPFVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRL 83
FYPGRDL PFVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRL
Sbjct: 24 FYPGRDLAAARRRRGAAARRPFVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRL 83
Query: 84 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIG 143
YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIG
Sbjct: 84 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIG 143
Query: 144 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQK 203
GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQK
Sbjct: 144 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQK 203
Query: 204 FIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTIL 263
FIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTIL
Sbjct: 204 FIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTIL 263
Query: 264 GLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLY 323
GLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLY
Sbjct: 264 GLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLY 323
Query: 324 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIG 383
DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIG
Sbjct: 324 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIG 383
Query: 384 EGCVIRHCTINHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKN 443
EGCVIRHCTINHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKN
Sbjct: 384 EGCVIRHCTINHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKN 443
Query: 444 AHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI 500
AHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI
Sbjct: 444 AHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI 500
>Os08g0345800 Similar to Glucose-1-phosphate adenylyltransferase small subunit,
chloroplast precursor (EC 2.7.7.27) (ADP-glucose
synthase) (ADP-glucose pyrophosphorylase) (AGPASE B)
(Alpha-D-glucose-1-phosphate adenyl transferase)
Length = 479
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/444 (89%), Positives = 422/444 (95%)
Query: 57 SSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNV 116
S LD SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN+
Sbjct: 36 SKNKNLDRSVDESVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI 95
Query: 117 SKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 176
SKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP+NPNWFQGTADAVRQY
Sbjct: 96 SKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQY 155
Query: 177 LWLFEEHNVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEERATAFGLMKID 236
LWLFEEHNVMEFLILAGDHLYRMDY+KFIQAHRET++DITVAALPMDE+RATAFGLMKID
Sbjct: 156 LWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKID 215
Query: 237 DEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQN 296
+EGRI+EFAEKPKGE+LK+MMVDTTILGLD RAKE+PYIASMGIYV SK+VML+LLR+
Sbjct: 216 EEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQ 275
Query: 297 FPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 356
FP ANDFGSEVIPGAT IGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR
Sbjct: 276 FPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 335
Query: 357 SAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCTINHSVVGLRSCISEGAVIEDSLLM 416
SA IYTQPR+LPPSKVLDADVTDSVIGEGCVI++C I+HSVVGLRSCISEGA+IEDSLLM
Sbjct: 336 SAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 395
Query: 417 GADYYETETDKKALSETGGIPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRET 476
GADYYETE DKK L E GGIPIGIGKN HIR+AIIDKNARIG+NVKIINVDN+QEA+RET
Sbjct: 396 GADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARET 455
Query: 477 DGYFIKSGIVTVIKDALIPSGTVI 500
DGYFIKSGIVTVIKDAL+PSGTVI
Sbjct: 456 DGYFIKSGIVTVIKDALLPSGTVI 479
>Os03g0735000 Similar to Glucose-1-phosphate adenylyltransferase large subunit 2
(EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose
pyrophosphorylase) (AGPASE S)
(Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL)
(Fragment)
Length = 511
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/444 (56%), Positives = 338/444 (76%), Gaps = 7/444 (1%)
Query: 62 LDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYV 121
L+ S +V+ +ILGGGAGTRL+PLTK+RAKPAVP+G YRLID+P+SNC+NS ++K+Y+
Sbjct: 70 LEARDSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 129
Query: 122 LTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 179
LTQFNSASLNRHLSRAY + G +GFVEVLAA Q+P E WFQGTADAVRQ+ WL
Sbjct: 130 LTQFNSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWL 189
Query: 180 FEEHNVME---FLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEERATAFGLMKID 236
F++ + LIL+GDHLYRMDY F+Q+HR+ ADI++ LP+D+ RA+ FGLMKID
Sbjct: 190 FDDAKAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKID 249
Query: 237 DEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQN 296
D GR+I F+EKPKG+ LK+M VDTT+LGL + AKE PYIASMG+Y+F K+++L LLR
Sbjct: 250 DTGRVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWR 309
Query: 297 FPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 356
FP ANDFGSE+IP + + + V+AYL++ YWEDIGTI++F+ ANL + ++P P FSFYD
Sbjct: 310 FPTANDFGSEIIPASAK-EINVKAYLFNDYWEDIGTIKSFFEANLSLAEQP-PRFSFYDA 367
Query: 357 SAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCTINHSVVGLRSCISEGAVIEDSLLM 416
+ +YT R LPPS + ++ +TDS+I GC + C I HSVVG+RS I ++D++++
Sbjct: 368 NKPMYTSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVML 427
Query: 417 GADYYETETDKKALSETGGIPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRET 476
GAD+YET+ ++ L G +PIGIG+N I+ IIDKNARIG+NV I N + +QEA R +
Sbjct: 428 GADFYETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTS 487
Query: 477 DGYFIKSGIVTVIKDALIPSGTVI 500
+G++I+SGI V+K+++I G VI
Sbjct: 488 EGFYIRSGITIVLKNSIIADGLVI 511
>Os07g0243200 Similar to ADP-glucose pyrophosphorylase large subunit 2 (EC
2.7.7.27) (Fragment)
Length = 509
Score = 513 bits (1321), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/437 (56%), Positives = 321/437 (73%), Gaps = 7/437 (1%)
Query: 69 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSA 128
+V IILGGGAGTRL+PLT+ RAKPAVP+G YRLIDIP+SNC+NS ++KIYVLTQFNS
Sbjct: 75 TVASIILGGGAGTRLFPLTRTRAKPAVPVGGCYRLIDIPMSNCINSKINKIYVLTQFNSQ 134
Query: 129 SLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---H 183
SLNRH++R Y G +GFVEVLAA Q+ WFQGTADAVRQ+LWLFE+
Sbjct: 135 SLNRHIARTYNIGEGVGFGDGFVEVLAATQTTGESGKRWFQGTADAVRQFLWLFEDARLK 194
Query: 184 NVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIE 243
+ LIL+GDHLYRMDY F+Q H + ADI+VA +P+DE RA+ FGLMK D GRI +
Sbjct: 195 RIENILILSGDHLYRMDYMDFVQKHVDKGADISVACVPVDESRASDFGLMKTDKNGRITD 254
Query: 244 FAEKPKGEKLKSMMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAANDF 303
F EKPK E LKSM +D GL E A Y+ASMGIYVF D++L+LLR ++P ANDF
Sbjct: 255 FLEKPKDESLKSMQLDMGTFGLRPEVADTCKYMASMGIYVFRTDILLRLLRGHYPTANDF 314
Query: 304 GSEVIPGATEIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQ 363
GSEVIP A + VQAYL+DGYWEDIGTI++F+ ANL +T + P+F FYD I+T
Sbjct: 315 GSEVIPMAAK-DYNVQAYLFDGYWEDIGTIKSFFEANLALTDQS-PNFYFYDPVKPIFTS 372
Query: 364 PRYLPPSKVLDADVTDSVIGEGCVIRHCTINHSVVGLRSCISEGAVIEDSLLMGADYYET 423
PR+LPP+KV + V +S++ GC + C+++ SV+G+RS + G ++D+++MGADYY+T
Sbjct: 373 PRFLPPTKVENCKVLNSIVSHGCFLTECSVDRSVIGVRSRLEPGVQLKDTMMMGADYYQT 432
Query: 424 ETDKKALSETGGIPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKS 483
E ++ + G +P+G+G+N IR IIDKNARIG+NV I+N N+QEA R +G++I+S
Sbjct: 433 EAERFSELSDGKVPVGVGENTIIRNCIIDKNARIGKNVMIMNSQNVQEAERPLEGFYIRS 492
Query: 484 GIVTVIKDALIPSGTVI 500
GI V+K+A+IP GTVI
Sbjct: 493 GITVVLKNAVIPDGTVI 509
>Os01g0633100 Similar to ADP-glucose pyrophosphorylase subunit SH2
Length = 518
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/465 (48%), Positives = 317/465 (68%), Gaps = 15/465 (3%)
Query: 46 VFTPRAVSDS---RSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR 102
VFT A D+ R+ + + ++ V +ILGGG G +L+PLT RA PAVP+G YR
Sbjct: 59 VFTSDADRDTPHLRTQSSRKNYADASHVSAVILGGGTGVQLFPLTSTRATPAVPVGGCYR 118
Query: 103 LIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIGGYKN--EGFVEVLAAQQSP 160
LIDIP+SNC NS ++KI+V+TQFNSASLNRH+ Y +GG N +G V+VLAA Q P
Sbjct: 119 LIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHHTY---LGGGINFTDGSVQVLAATQMP 175
Query: 161 ENP-NWFQGTADAVRQYLWLFEEH----NVMEFLILAGDHLYRMDYQKFIQAHRETNADI 215
+ P WFQGTADA+R+++W+ E+H N+ +IL GD LYRM+Y + +Q H + NADI
Sbjct: 176 DEPAGWFQGTADAIRKFMWILEDHYNQNNIEHVVILCGDQLYRMNYMELVQKHVDDNADI 235
Query: 216 TVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPY 275
T++ P+D RA+ +GL+K DD GR+I+F EKP+G L+SM VDT+ L + ++ PY
Sbjct: 236 TISCAPIDGSRASDYGLVKFDDSGRVIQFLEKPEGADLESMKVDTSFLSYAIDDKQKYPY 295
Query: 276 IASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIEA 335
IASMGIYV KDV+L +L+ + DFGSE++P A + V+A ++ YWEDIGTI++
Sbjct: 296 IASMGIYVLKKDVLLDILKSKYAHLQDFGSEILPRAV-LEHNVKACVFTEYWEDIGTIKS 354
Query: 336 FYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCTINH 395
F++ANL +T++P P F FYD +T PRYLPP+++ + D++I +GC CTI H
Sbjct: 355 FFDANLALTEQP-PKFEFYDPKTPFFTSPRYLPPARLEKCKIKDAIISDGCSFSECTIEH 413
Query: 396 SVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKNAHIRKAIIDKNA 455
SV+G+ S +S G ++D+++MGAD YETE + L G +PIGIG+N IR IID NA
Sbjct: 414 SVIGISSRVSIGCELKDTMMMGADQYETEEETSKLLFEGKVPIGIGENTKIRNCIIDMNA 473
Query: 456 RIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI 500
RIG NV I N +QE+ +GY+I+SGIV ++K+A I GTVI
Sbjct: 474 RIGRNVIIANTQGVQESDHPEEGYYIRSGIVVILKNATIKDGTVI 518
>Os05g0580000 Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment)
Length = 519
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/445 (50%), Positives = 309/445 (69%), Gaps = 15/445 (3%)
Query: 63 DPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVL 122
DP+ V +ILGGG GT+L+PLT RA PAVP+G YRLIDIP+SNC NS ++KI+++
Sbjct: 83 DPN---EVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFIM 139
Query: 123 TQFNSASLNRHLSRAYGNNIGGYKN--EGFVEVLAAQQSP-ENPNWFQGTADAVRQYLWL 179
TQFNSASLNRH+ R Y +GG N +G VEVLAA Q P E WFQGTADAVR+++W+
Sbjct: 140 TQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFQGTADAVRKFIWV 196
Query: 180 FEE---HNVME-FLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEERATAFGLMKI 235
E+ H +E LIL+GD LYRMDY + +Q H + NADIT++ P+ E RA+ +GL+K
Sbjct: 197 LEDYYKHKAIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASDYGLVKF 256
Query: 236 DDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQ 295
D GR+I+F+EKPKG L++M VDT+ L + + PYIASMG+YVF +DV+L LL+
Sbjct: 257 DSSGRVIQFSEKPKGTDLEAMKVDTSFLNFAIDDPTKFPYIASMGVYVFKRDVLLNLLKS 316
Query: 296 NFPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYD 355
+ +DFGSE++P A VQAY++ YWEDIGTI +F++AN+ + ++P P F FYD
Sbjct: 317 RYAELHDFGSEILPRALH-EHNVQAYVFADYWEDIGTIRSFFDANMALCEQP-PKFEFYD 374
Query: 356 RSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCTINHSVVGLRSCISEGAVIEDSLL 415
+T PRYLPP+K + D++I GC +R CTI HS+VG+RS ++ ++++++
Sbjct: 375 PKTPFFTSPRYLPPTKSDKCRIKDAIISHGCFLRECTIEHSIVGVRSRLNSACELKNTMM 434
Query: 416 MGADYYETETDKKALSETGGIPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRE 475
MGAD YETE + L G +PIG+G+N I IID NAR+G NV I N + +QE+ R
Sbjct: 435 MGADLYETEDEISRLLSEGKVPIGVGENTKINNCIIDMNARVGRNVVITNSEGVQESDRP 494
Query: 476 TDGYFIKSGIVTVIKDALIPSGTVI 500
+GY+I+SGIV ++K+A I G VI
Sbjct: 495 EEGYYIRSGIVVILKNATIKDGKVI 519
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,295,667
Number of extensions: 637444
Number of successful extensions: 1289
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1271
Number of HSP's successfully gapped: 6
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)