Os09g0298200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Brittle 2.
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Os09g0298200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Brittle 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 255.14 | 0.75 | 11 | -2.83 | 0.0638 | -3.31 | 2.56 | 1.75 | -1.39 | 7.22 | 68.21 | 1193 | 16.5 | -- |
| 258.3 | 0.749 | 11 | -2.59 | 0.112 | -3.22 | 2.51 | -- | -1.35 | 7.07 | 68.89 | 1165 | 16.2 | -- |
| 270.63 | 0.766 | 11 | -2.74 | 0.2 | -3.33 | -- | 1.37 | -1.41 | 12.2 | 69.97 | 1219 | 17 | -- |
| 272.76 | 0.769 | 11 | -2.55 | 0.196 | -3.28 | -- | -- | -1.36 | 11.9 | 70.22 | 1200 | 16.7 | -- |
| 272.69 | 0.769 | 11 | -2.72 | -- | -3.32 | -- | 1.42 | -1.4 | -- | 69.42 | 1207 | 16.7 | -- |
| 435.32 | 0.978 | 10.9 | -2.45 | 0.245 | -- | 2.26 | -- | -0.935 | 7.08 | -- | -- | -- | -- |
| 445.88 | 0.989 | 10.9 | -2.39 | 0.32 | -- | -- | -- | -0.936 | 9.88 | -- | -- | -- | -- |
| 274.96 | 0.772 | 11 | -2.55 | -- | -3.26 | -- | -- | -1.36 | -- | 69.61 | 1182 | 16.5 | -- |
| 427.54 | 0.963 | 11 | -- | 0.275 | -3.44 | -- | -- | -1.12 | 11.1 | 81 | 1210 | 15.9 | -- |
| 452.02 | 0.993 | 10.9 | -2.4 | -- | -- | -- | -- | -0.935 | -- | -- | -- | -- | -- |
| 597 | 1.14 | 10.8 | -- | 0.331 | -- | -- | -- | -0.669 | 10.4 | -- | -- | -- | -- |
| 432.77 | 0.969 | 11 | -- | -- | -3.53 | -- | -- | -1.13 | -- | 80.79 | 1209 | 15.9 | -- |
| 603.72 | 1.15 | 10.9 | -- | -- | -- | -- | -- | -0.669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.69 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 2 | 264.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 21 | 267.64 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 26 | 268.54 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 28 | 268.66 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 121 | 277.23 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 212 | 283.10 | humidity | 80 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 319 | 286.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 332 | 287.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 370 | 287.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 389 | 288.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 439 | 288.83 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 503 | 289.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 505 | 289.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 524 | 290.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 538 | 290.32 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 555 | 290.48 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 629 | 291.61 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 633 | 291.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 661 | 291.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 668 | 292.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 735 | 292.58 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 747 | 292.68 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 803 | 293.11 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 918 | 294.35 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 932 | 294.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 993 | 295.08 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |