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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0243200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ADP-glucose pyrophosphorylase large subunit 2 (EC 2.7.7.27) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.034) R2 : 0.254
β1 : -1.31 (0.125) R2dD : 0.187 R2D : 0.0929
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.622 (0.0726) R2dN8 : 0.161 R2N8 : 0.0664
σ : 0.638
deviance : 186.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.38 0.615 3.84 -1.25 0.0625 3.42 -0.99 7.68 -0.595 6.96 19.93 322 -- --
184.34 0.637 3.77 -1.25 0.14 0.336 -0.528 -- -0.606 7.27 19.93 322 -- --
173.62 0.614 3.84 -1.23 0.0748 3.63 -- 7.97 -0.598 6.95 19.68 320 -- --
180.98 0.627 3.75 -1.15 0.101 0.532 -- -- -0.504 7.82 26.22 131 -- --
173.81 0.614 3.85 -1.22 -- 4.2 -- 9.16 -0.593 -- 19.55 320 -- --
185.01 0.638 3.78 -1.3 0.142 -- -0.5 -- -0.626 6.86 -- -- -- --
185.63 0.638 3.78 -1.31 0.142 -- -- -- -0.625 6.36 -- -- -- --
181.43 0.627 3.75 -1.17 -- 0.549 -- -- -0.505 -- 26.45 193 -- --
214.31 0.682 3.71 -- 0.0043 0.971 -- -- -0.295 19.1 26.1 242 -- --
186.68 0.638 3.78 -1.31 -- -- -- -- -0.622 -- -- -- -- --
231.01 0.711 3.74 -- 0.126 -- -- -- -0.479 6.93 -- -- -- --
214.3 0.682 3.71 -- -- 0.972 -- -- -0.297 -- 26.1 238 -- --
231.85 0.711 3.75 -- -- -- -- -- -0.477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.07 atmosphere 995.0 14400 > th dose independent rect. 18 3
5 169.54 atmosphere 995.0 14400 < th dose independent rect. 17 1
6 169.54 atmosphere 995.0 14400 < th dose dependent rect. 17 1
35 170.20 radiation 1.0 14400 < th dose dependent rect. 23 5
36 170.26 atmosphere 1000.0 1440 < th dose independent rect. 10 1
48 170.90 atmosphere 1000.0 1440 < th dose dependent rect. 11 1
51 171.01 atmosphere 1000.0 1440 > th dose independent rect. 10 2
54 171.14 atmosphere 995.0 14400 > th dose independent rect. 13 8
55 171.17 temperature 20.0 720 > th dose independent rect. 20 5
59 171.23 wind 9.0 4320 > th dose independent rect. 17 4
94 171.40 wind 9.0 4320 < th dose independent rect. 20 7
95 171.41 atmosphere 995.0 14400 > th dose independent rect. 8 13
116 171.52 precipitation 0.1 4320 > th dose dependent rect. 17 1
117 171.53 wind 9.0 4320 > th dose dependent rect. 17 4
127 171.63 wind 7.0 4320 > th dose independent rect. 20 1
128 171.63 wind 7.0 4320 < th dose independent rect. 20 1
131 171.64 wind 9.0 4320 < th dose independent rect. 20 5
142 171.68 temperature 20.0 270 < th dose dependent rect. 24 22
144 171.78 wind 9.0 4320 < th dose independent rect. 17 4
145 171.78 wind 9.0 4320 > th dose independent rect. 19 9
147 171.79 wind 7.0 4320 > th dose independent rect. 20 4
154 171.84 wind 9.0 4320 > th dose independent rect. 19 7
160 171.86 wind 7.0 4320 > th dose dependent rect. 20 1
173 171.90 wind 7.0 4320 > th dose dependent rect. 20 4
179 171.93 wind 9.0 4320 > th dose independent rect. 17 11
196 171.99 wind 9.0 4320 > th dose dependent rect. 17 11
197 172.00 precipitation 0.1 4320 > th dose independent rect. 17 1
198 172.00 wind 7.0 4320 > th dose dependent rect. 20 7
204 172.04 wind 9.0 4320 > th dose dependent rect. 19 9
211 172.07 wind 9.0 4320 < th dose independent rect. 17 11
229 172.14 precipitation 0.1 4320 < th dose independent rect. 17 1
230 172.14 precipitation 0.1 4320 < th dose dependent rect. 17 1
231 172.15 temperature 20.0 720 > th dose independent rect. 6 18
238 172.18 wind 9.0 4320 < th dose independent rect. 17 8
273 172.23 temperature 20.0 270 < th dose dependent rect. 14 18
296 172.27 temperature 20.0 270 < th dose dependent rect. 17 15
305 172.30 temperature 20.0 720 < th dose independent sin 18 NA
309 172.31 temperature 20.0 270 < th dose dependent rect. 20 12
314 172.33 temperature 20.0 720 < th dose independent rect. 20 3
326 172.34 temperature 20.0 720 < th dose independent rect. 11 14
347 172.42 temperature 20.0 270 < th dose dependent rect. 24 7
353 172.44 temperature 20.0 720 < th dose independent rect. 19 6
364 172.50 temperature 20.0 720 > th dose independent rect. 14 11
367 172.52 temperature 20.0 270 < th dose dependent sin 7 NA
377 172.55 temperature 20.0 270 < th dose dependent rect. 24 10
379 172.56 temperature 20.0 720 < th dose independent rect. 17 8
429 172.66 wind 9.0 4320 > th dose dependent rect. 17 17
437 172.69 temperature 20.0 1440 < th dose independent rect. 21 1
452 172.77 temperature 30.0 270 < th dose dependent rect. 24 9
506 172.89 temperature 20.0 270 > th dose independent rect. 19 21
508 172.90 temperature 20.0 270 < th dose dependent rect. 20 23
509 172.91 temperature 20.0 1440 > th dose independent rect. 20 1
512 172.91 temperature 20.0 270 < th dose dependent no NA NA
516 172.91 temperature 20.0 270 < th dose dependent rect. 18 22
568 172.98 wind 9.0 4320 > th dose dependent sin 12 NA
572 172.99 temperature 20.0 720 > th dose independent rect. 11 14
576 173.00 temperature 20.0 270 > th dose independent rect. 4 22
578 173.00 wind 9.0 4320 > th dose dependent rect. 17 19
604 173.09 temperature 20.0 270 < th dose dependent rect. 3 23
617 173.15 temperature 20.0 270 > th dose independent rect. 20 15
679 173.30 wind 7.0 1440 > th dose dependent rect. 1 2
683 173.31 wind 7.0 1440 > th dose independent rect. 1 2
709 173.35 temperature 20.0 270 > th dose independent rect. 20 17
713 173.37 wind 9.0 4320 > th dose independent rect. 17 17
717 173.38 temperature 15.0 270 > th dose dependent rect. 20 13
785 173.51 temperature 30.0 90 < th dose dependent rect. 3 8
814 173.58 precipitation 0.1 14400 > th dose dependent rect. 20 1
833 173.62 temperature 20.0 720 > th dose independent sin 20 NA
854 173.69 wind 1.0 4320 < th dose dependent rect. 10 1
948 174.05 temperature 20.0 720 < th dose dependent rect. 21 1
977 174.13 temperature 25.0 270 < th dose independent rect. 1 7