Os05g0580000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment).
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Os05g0580000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 516.65 | 1.07 | 10.4 | 0.803 | 3.27 | 2.52 | 1.2 | 2.78 | -0.926 | 10.5 | 95.44 | 792 | 17.7 | 3.37 |
| 527.2 | 1.07 | 10.5 | 0.647 | 3.53 | 2.77 | 0.33 | -- | -0.97 | 10.7 | 97.38 | 779 | 17.6 | 3.48 |
| 521.68 | 1.06 | 10.4 | 0.826 | 3.41 | 2.67 | -- | 2.43 | -0.92 | 10.6 | 95.89 | 788 | 17.6 | 3.38 |
| 525.76 | 1.07 | 10.4 | 0.645 | 3.4 | 2.71 | -- | -- | -0.9 | 10.5 | 94.81 | 772 | 17.6 | 3.43 |
| 865.17 | 1.37 | 10.6 | 0.808 | -- | 2.16 | -- | 2.49 | -0.974 | -- | 102.8 | 1104 | 18.1 | 4.63 |
| 661.3 | 1.21 | 10.4 | 0.478 | 2.74 | -- | 1.43 | -- | -0.966 | 8.42 | -- | -- | -- | -- |
| 667.69 | 1.21 | 10.4 | 0.523 | 2.73 | -- | -- | -- | -0.965 | 8.47 | -- | -- | -- | -- |
| 599.28 | 1.14 | 10.5 | 0.653 | -- | 3.68 | -- | -- | -0.938 | -- | 175.4 | 1223 | 15.4 | 14.2 |
| 535.2 | 1.08 | 10.4 | -- | 3.44 | 2.73 | -- | -- | -0.93 | 10.5 | 94.96 | 773 | 17.5 | 3.55 |
| 1085.51 | 1.54 | 10.5 | 0.536 | -- | -- | -- | -- | -0.938 | -- | -- | -- | -- | -- |
| 674.91 | 1.22 | 10.5 | -- | 2.74 | -- | -- | -- | -1.02 | 8.46 | -- | -- | -- | -- |
| 608.62 | 1.15 | 10.5 | -- | -- | 3.53 | -- | -- | -0.976 | -- | 184.8 | 1224 | 15.4 | 14.1 |
| 1093.08 | 1.54 | 10.5 | -- | -- | -- | -- | -- | -0.998 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 525.68 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 5 | 530.98 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 6 | 530.99 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 17 | 533.28 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 54 | 539.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 58 | 540.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 546.22 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 76 | 546.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 84 | 548.89 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 105 | 550.21 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 109 | 550.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 110 | 551.01 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 121 | 551.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 264 | 558.09 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 266 | 558.20 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 271 | 558.35 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 288 | 559.45 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 341 | 561.31 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 373 | 562.55 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 382 | 562.86 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 383 | 563.05 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 392 | 563.45 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 393 | 563.45 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 415 | 563.76 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 450 | 564.22 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 508 | 566.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 529 | 566.79 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 547 | 567.20 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 555 | 567.37 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 607 | 568.66 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 608 | 568.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 623 | 568.91 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 19 |
| 711 | 570.60 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 739 | 571.09 | humidity | 70 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 846 | 573.08 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 886 | 573.56 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 892 | 573.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 906 | 573.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 918 | 574.06 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 919 | 574.07 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 943 | 574.34 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 949 | 574.50 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 954 | 574.55 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 990 | 574.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 9 |