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Os08g0345800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.44 | 0.327 | 13.6 | -1.81 | 0.384 | -0.66 | 1.37 | 0.71 | -0.73 | 5.44 | 7.196 | 1466 | -- | -- |
| 49.07 | 0.326 | 13.6 | -1.8 | 0.4 | -0.752 | 1.4 | -- | -0.717 | 5.22 | 5.48 | 1482 | -- | -- |
| 53.02 | 0.339 | 13.6 | -1.8 | 0.394 | -0.689 | -- | 0.728 | -0.743 | 5.54 | 6.677 | 1471 | -- | -- |
| 53.64 | 0.341 | 13.6 | -1.77 | 0.394 | -0.696 | -- | -- | -0.717 | 6.16 | 5.552 | 1445 | -- | -- |
| 60.95 | 0.364 | 13.6 | -1.83 | -- | -0.715 | -- | 0.659 | -0.741 | -- | 6.342 | 1452 | -- | -- |
| 58.35 | 0.358 | 13.6 | -1.68 | 0.388 | -- | 1.44 | -- | -0.587 | 5.48 | -- | -- | -- | -- |
| 63.08 | 0.372 | 13.6 | -1.68 | 0.407 | -- | -- | -- | -0.592 | 6.23 | -- | -- | -- | -- |
| 61.51 | 0.365 | 13.6 | -1.74 | -- | -0.727 | -- | -- | -0.715 | -- | 5.708 | 1450 | -- | -- |
| 128.07 | 0.527 | 13.6 | -- | 0.4 | -0.635 | -- | -- | -0.548 | 5.63 | 10 | 1495 | -- | -- |
| 71.68 | 0.396 | 13.6 | -1.66 | -- | -- | -- | -- | -0.583 | -- | -- | -- | -- | -- |
| 137.05 | 0.548 | 13.5 | -- | 0.384 | -- | -- | -- | -0.406 | 6.46 | -- | -- | -- | -- |
| 128.27 | 0.527 | 13.6 | -- | -- | -0.641 | -- | -- | -0.535 | -- | 10 | 7232 | -- | -- |
| 144.73 | 0.562 | 13.5 | -- | -- | -- | -- | -- | -0.399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.99 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 3 | 48.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 10 | 48.51 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 12 | 48.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 16 | 48.55 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 28 | 48.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 33 | 48.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 34 | 48.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 35 | 48.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 40 | 48.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 67 | 48.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 72 | 48.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 74 | 48.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 77 | 48.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 85 | 48.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 111 | 48.90 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 164 | 49.03 | humidity | 70 | 1440 | < th | dose independent | sin | 17 | NA |
| 185 | 49.06 | radiation | 10 | 1440 | < th | dose dependent | sin | 14 | NA |
| 199 | 49.08 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 217 | 49.11 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 235 | 49.13 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 274 | 49.18 | radiation | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 376 | 49.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 390 | 49.26 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 498 | 49.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 522 | 49.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 585 | 49.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 593 | 49.38 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 601 | 49.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 604 | 49.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 619 | 49.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 638 | 49.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 645 | 49.40 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 686 | 49.41 | radiation | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 700 | 49.42 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 736 | 49.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 789 | 49.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 817 | 49.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 818 | 49.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 820 | 49.49 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 832 | 49.50 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 833 | 49.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 834 | 49.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 859 | 49.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 880 | 49.50 | radiation | 1 | 1440 | > th | dose dependent | sin | 17 | NA |
| 883 | 49.50 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 944 | 49.52 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
