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Os03g0735000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucose-1-phosphate adenylyltransferase large subunit 2 (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE S) (Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.023) R2 : 0.694
β1 : -2.44 (0.0844) R2dD : 0.583 R2D : 0.359
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.951 (0.0492) R2dN8 : 0.336 R2N8 : 0.112
σ : 0.432
deviance : 85.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.26 0.359 11.4 -1.41 0.256 -0.191 1.52 6.53 -0.798 4.05 29.99 2417 -- --
60.75 0.363 11.6 -2.65 0.288 0.57 1.45 -- -1.14 3.46 33 12256 -- --
64.17 0.373 11.4 -1.27 0.256 -0.292 -- 7.18 -0.808 2.94 30.1 2559 -- --
67.29 0.382 11.6 -2.67 0.29 0.585 -- -- -1.14 3.09 33 12270 -- --
67.86 0.384 11.4 -1.24 -- -0.28 -- 7.39 -0.8 -- 30 2578 -- --
72.55 0.399 11.6 -2.43 0.309 -- 1.56 -- -0.95 3.57 -- -- -- --
79.74 0.418 11.6 -2.46 0.318 -- -- -- -0.959 2.74 -- -- -- --
71.89 0.395 11.6 -2.69 -- 0.679 -- -- -1.24 -- 33.72 13718 -- --
170.47 0.608 11.5 -- 0.596 -1.13 -- -- -0.433 2.72 26.2 47520 -- --
85.61 0.432 11.6 -2.44 -- -- -- -- -0.951 -- -- -- -- --
238.66 0.723 11.5 -- 0.27 -- -- -- -0.686 2.65 -- -- -- --
141.09 0.553 11.4 -- -- -1.63 -- -- -0.285 -- 18.68 47520 -- --
242.91 0.727 11.5 -- -- -- -- -- -0.68 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.83 humidity 50 14400 < th dose dependent rect. 16 19
2 52.81 humidity 50 14400 < th dose dependent rect. 16 1
3 53.19 humidity 60 14400 > th dose independent rect. 18 2
4 53.20 humidity 60 14400 < th dose dependent rect. 17 16
9 53.27 humidity 60 14400 > th dose independent rect. 18 12
16 53.40 humidity 60 14400 < th dose independent rect. 18 1
48 53.56 wind 9 43200 < th dose independent rect. 20 1
50 53.71 humidity 50 14400 > th dose independent rect. 16 18
63 53.78 humidity 50 14400 < th dose independent rect. 16 19
65 53.84 humidity 50 14400 > th dose independent rect. 17 16
67 54.03 wind 9 43200 > th dose independent rect. 20 1
68 54.06 humidity 60 14400 < th dose dependent rect. 18 1
71 54.24 temperature 10 1440 > th dose dependent rect. 11 4
75 54.30 humidity 50 14400 < th dose independent rect. 17 17
83 54.49 temperature 10 1440 > th dose dependent rect. 13 1
99 54.61 humidity 50 14400 < th dose independent rect. 16 1
105 54.67 wind 9 43200 < th dose independent rect. 20 3
121 54.88 wind 7 43200 > th dose dependent rect. 20 1
122 54.90 humidity 70 1440 > th dose dependent rect. 10 4
163 55.22 wind 9 43200 > th dose dependent rect. 17 5
192 55.35 humidity 50 14400 > th dose independent rect. 16 1
210 55.53 humidity 50 14400 > th dose independent rect. 16 4
214 55.53 humidity 50 14400 > th dose independent rect. 16 14
232 55.67 wind 9 43200 > th dose dependent rect. 16 13
243 55.75 wind 9 43200 > th dose dependent rect. 16 8
257 55.81 temperature 30 1440 < th dose dependent rect. 10 5
326 56.13 wind 9 43200 < th dose independent rect. 20 8
354 56.20 wind 9 43200 > th dose dependent rect. 17 1
359 56.21 humidity 80 1440 > th dose independent rect. 9 6
369 56.26 humidity 80 1440 < th dose independent rect. 9 6
378 56.31 wind 7 43200 < th dose independent rect. 18 4
383 56.33 wind 9 43200 < th dose independent rect. 17 7
384 56.33 wind 9 43200 < th dose independent rect. 17 11
404 56.38 temperature 30 720 < th dose dependent rect. 4 15
408 56.41 humidity 80 1440 < th dose independent rect. 10 4
429 56.46 wind 7 43200 > th dose independent rect. 18 4
430 56.46 wind 9 43200 > th dose independent rect. 20 8
451 56.51 temperature 30 1440 < th dose dependent rect. 13 1
474 56.58 wind 1 14400 > th dose independent rect. 2 1
496 56.63 temperature 30 720 < th dose dependent sin 0 NA
501 56.64 temperature 30 1440 < th dose dependent rect. 11 1
528 56.76 wind 9 43200 > th dose independent rect. 17 12
531 56.77 temperature 10 1440 > th dose dependent sin 22 NA
542 56.80 wind 9 43200 > th dose independent rect. 17 7
560 56.84 temperature 30 1440 < th dose dependent rect. 13 4
596 56.97 radiation 20 4320 < th dose independent rect. 15 16
613 57.01 wind 9 43200 > th dose dependent rect. 20 9
616 57.02 humidity 80 1440 < th dose independent rect. 9 10
678 57.14 humidity 80 1440 > th dose independent rect. 9 10
702 57.17 radiation 20 4320 < th dose independent rect. 15 3
722 57.19 radiation 30 4320 < th dose dependent rect. 15 2
744 57.21 radiation 30 4320 < th dose dependent rect. 15 4
764 57.23 radiation 20 4320 > th dose dependent rect. 16 15
773 57.25 humidity 80 14400 < th dose independent rect. 17 1
778 57.25 radiation 30 4320 < th dose dependent rect. 15 13
817 57.30 temperature 15 270 > th dose dependent rect. 6 16
818 57.31 radiation 10 14400 < th dose independent rect. 17 1
823 57.31 temperature 10 720 > th dose dependent rect. 2 17
856 57.36 radiation 1 4320 > th dose dependent rect. 15 2
897 57.42 humidity 90 1440 < th dose dependent rect. 10 5
963 57.50 humidity 80 14400 > th dose independent rect. 17 1